Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000883 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000883 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17561
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (82.05%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17561

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (82.05%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F005743	Metagenome / Metatranscriptome	391	Y
F041249	Metagenome	160	Y
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100088313	F080091	GAGG	MSLKLWKFLSVRIKVEDHNGKIHWYDETDCNAHDIGIEYEIEDIINKQGGTFDEEEVGKKQDT
Ga0183755_100088314	F005743	GGAGG	MRNLIVYKVDYANRHEDYNQLTGKFVRTKRIVMTPDEVNQTGGYWRNHRNVEKKFSKQMNGSEDAYWDCKYRVLRVRKA
Ga0183755_10008834	F041249	AGGAG	MNEEQLLTSTHKRTRRNKNTIKYGMFGLSLGEHTYNRLNEYCVKHNLYKATLVKTLVVDYLDRAEQKENNE
Ga0183755_10008836	F003677	N/A	MVDKNVYYFEADVGKKVYEIEHETTYVTKWQVVAEDRDQAFDIWLDQSKEDLKTEDGTNCVCSYVKDYGQMGDTKEIAEIKYNKEDDEVYAE
Ga0183755_10008837	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDEIDKESEDNFEAFKDKLKISKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLAITK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000883

Overview

Ecosystem & Geography

Associated Families

Sequences