NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1000211

Scaffold Ga0183755_1000211


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1000211 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33347
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (88.14%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002430Metagenome / Metatranscriptome560Y
F011050Metagenome / Metatranscriptome296Y
F017047Metagenome / Metatranscriptome243Y
F047976Metagenome149Y
F048647Metagenome148Y
F060432Metagenome / Metatranscriptome133Y
F061818Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100021129F060432AGGAMSKKKTVIPYTITHEERLALLEAHNNLRTALQTVVECQDLWMSDVRNLEKLECDLHRIFKFVPKQDDAGHRMHYADWILDEDDTNE
Ga0183755_100021132F002430AGGAGMITLNLPPKQVNAILVALDAEIEMQLGGRPVDWESFPEVAALLIAYYNTRCKFEGNDSEH
Ga0183755_100021136F061818AGGAGMTKSQEFWAWVDQCPDGVYINHDFTDDEDDQKIHVFGFAVPKEIDND
Ga0183755_100021138F048647AGGAMDKKLYNVKIDFEVWYDRNFEIEADSADEARNIAHDIAREQTMHLIDADIDVENDGGWTYVDQDYHTVHVELEE
Ga0183755_100021146F017047AGGAGLATIYKDELVQTLWDLFKDVHGVRPRGMNYDLCSITDLQSEVATLQRMLDEELRHQRKLEDDAINSCMDSGCPDIATAMRWLEDAYEMEWV
Ga0183755_100021148F047976GAGGMAKRGAIVDMGKHKPLGSSWRSMDTQAYSRSYEPETRPDFHVYVTGQADAWQAEYDAKIAADAKRDAQMQALLELKQRMIDKNLL
Ga0183755_100021158F011050AGAAGMPVLATGSKFRTEVVALGTTNKTTVYTVPANFSSHLENLFVSNNHTGIVTLGLHLFHADDNAEYDLLTAHNIAGGSYESVFTVDRPLYLHAGDIIKCTAGTASKLVVTTSAEEFFDPAR
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