NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243510_100021

Scaffold Ga0243510_100021


Overview

Basic Information
Taxon OID3300029397 Open in IMG/M
Scaffold IDGa0243510_100021 Open in IMG/M
Source Dataset NameAnode biofilm microbial communities from acetate-fed MFC - AM-anode biofilm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterTokyo University of Pharmacy and Life Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)251235
Total Scaffold Genes194 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (43.30%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Industrial Production → Engineered Product → Bioanode → Unclassified → Anode Biofilm → Electrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan

Source Dataset Sampling Location
Location NameJapan: Tokyo
CoordinatesLat. (o)35.638Long. (o)139.3817Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051329Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0243510_100021126F051329N/AMPYMQVPKRSPRQEYRLKQRERIDAAPVIAKKFPRLKALKVTLEYFDATGSTKQGEMKCKLNVDHAKSVLWFACPGVECSCGDFDLSEALVKAVRGGLKVATGELHCQGTRQRGDREPVVCRTLLRYKLNLNYD

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