Scaffold Ga0243914_100097

Overview

Basic Information

• Taxon OID: 3300029373
• Scaffold ID: Ga0243914_100097
• Source Dataset Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_28_stool_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149105
• Total Scaffold Genes: 193
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (39.38%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location

• Location Name: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F089590	Metagenome	109	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243914_10009711	F080673	N/A	MDEIELLRLQDEALFYLRDNITKDEAYYVLTTDEDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLAASYIGVDMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL
Ga0243914_100097113	F050794	GGA	MQDLRIQRAKVLMMLYTSHYFVNNRQKQLLDHTYALSRDQAFDYMIEFNKRLSDKVGIKCTMDILLPTDDDNTNIIIEYNGIIKKLMKEAGKLELDTDAIKEMMRDLLNELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
Ga0243914_100097116	F077313	N/A	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTRIGFDIQHPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTAIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRQQSQMRYKNGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSVYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIIFRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVARRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0243914_100097141	F106193	N/A	VGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSEYIKP
Ga0243914_100097149	F075481	AGAAG	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGVNKTRNDIKDLDNKTNIKSKDVDDKKESRWPIVWIVAGILMILLVLVYILKKIKVL
Ga0243914_100097150	F089590	AGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILAVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0243914_100097152	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNFYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQACKMTSFPIVDIPGLEFLAVSHTMYVNDGIPVDKLSRSKKLIYIDLQNAGQRMTVIPEAITNKTEVYYLYMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFAFLNDWKNGERRTGWNDDNMSGRGLEHLTSLGATHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGRRNQFYGLSVSMYNSTYPYENQRPTGQEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPA
Ga0243914_100097171	F058555	N/A	METKIALLQKIKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVVAYLTIVNVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKYNGIANTKDRKNVTIGCLRLLYKGKYMHILISTEYIKDVFLGEKSYEMSKAG
Ga0243914_1000972	F057001	AGG	MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKDIVPALVSLAKDKEVVIQLCKDILPRINNTFCAYKEIERVYLDKQDQDKNTKLPPDKVAEISITGKEHKRFGYNEPIEYEGGVYYDVFNGSDKRIVKCAVPIKRYTYNLIAKCITYYLTHPKNKR
Ga0243914_10009747	F078005	N/A	MKKSKFVKELEKIIDMVKAEDDDFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANTMASMDDRTFACLMSEVYKQKFTKAITISEDEDDEDN
Ga0243914_10009767	F083451	N/A	MQKDQIMEEKDVLNLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMVDVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE
Ga0243914_10009777	F076653	N/A	MTLMDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDQCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRFWLEKYDDPTDKGMVNSPIQFMYLYLYYTFNK