Scaffold Ga0243727

Basic Information
Taxon OID	3300029340 Open in IMG/M
Scaffold ID	Ga0243727_1000173 Open in IMG/M
Source Dataset Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029340 Open in IMG/M

Scaffold ID

Ga0243727_1000173 Open in IMG/M

Source Dataset Name

Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Institute for Genome Sciences, University of Maryland School of Medicine

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	76356
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (27.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

76356

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (27.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location Name	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Baltimore

Coordinates

Lat. (^o)

39.28846264

Long. (^o)

-76.62594594

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F064817	Metagenome	128	N
F094005	Metagenome / Metatranscriptome	106	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243727_100017328	F064817	N/A	MNIKNLFNRFRKRELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0243727_100017330	F105375	N/A	MKNNEIFQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAMYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0243727_100017342	F032312	N/A	MARIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVVLMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243727_100017343	F094005	N/A	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDNETLEKVITLDKKLKKLIEKLNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0243727_1000173

Overview

Ecosystem & Geography

Associated Families

Sequences