Scaffold Ga0243320

Basic Information
Taxon OID	3300029337 Open in IMG/M
Scaffold ID	Ga0243320_1000380 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Zhejiang University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029337 Open in IMG/M

Scaffold ID

Ga0243320_1000380 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Zhejiang University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	68370
Total Scaffold Genes	94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (21.28%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

68370

Total Scaffold Genes

94 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (21.28%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location Name	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

China: Hangzhou

Coordinates

Lat. (^o)

30.0

Long. (^o)

120.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F101357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243320_100038016	F032312	N/A	MPKIKDYDEDLSAPKILRRRDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNGDALVCLGFTWFKLLGVALMMLLYPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243320_10003803	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLSHSLTYILDQTKEEGRRICIQNIIERNINQENQDENETI
Ga0243320_10003807	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0243320_10003809	F044555	N/A	MKTTNPSSRITLSQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPMVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPGDLVSLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0243320_1000380

Overview

Ecosystem & Geography

Associated Families

Sequences