Sample 3300029337

Overview

Basic Information
IMG/M Taxon OID	3300029337 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133112 \| Gp0282459 \| Ga0243320
Sample Name	Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5
Sequencing Status	Permanent Draft
Sequencing Center	Zhejiang University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	220038957
Sequencing Scaffolds	10
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F074899	Metagenome / Metatranscriptome	119	N
F101357	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F032312

Metagenome / Metatranscriptome

180

F044555

Metagenome / Metatranscriptome

154

F047125

Metagenome / Metatranscriptome

150

F047126

Metagenome

150

F052660

Metagenome

142

F055775

Metagenome

138

F062845

Metagenome

130

F064817

Metagenome

128

F067845

Metagenome

125

F074899

Metagenome / Metatranscriptome

119

F101357

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243320_1000380	All Organisms → cellular organisms → Bacteria	68370	Open in IMG/M
Ga0243320_1000831	Not Available	34125	Open in IMG/M
Ga0243320_1001454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18891	Open in IMG/M
Ga0243320_1001555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	17522	Open in IMG/M
Ga0243320_1003571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	6781	Open in IMG/M
Ga0243320_1010080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2515	Open in IMG/M
Ga0243320_1016881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1634	Open in IMG/M
Ga0243320_1017631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1577	Open in IMG/M
Ga0243320_1018928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1486	Open in IMG/M
Ga0243320_1022018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1313	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0243320_1000380

All Organisms → cellular organisms → Bacteria

68370

Open in IMG/M

Ga0243320_1000831

Not Available

34125

Open in IMG/M

Ga0243320_1001454

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

18891

Open in IMG/M

Ga0243320_1001555

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

17522

Open in IMG/M

Ga0243320_1003571

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158

6781

Open in IMG/M

Ga0243320_1010080

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2515

Open in IMG/M

Ga0243320_1016881

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

1634

Open in IMG/M

Ga0243320_1017631

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1577

Open in IMG/M

Ga0243320_1018928

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1486

Open in IMG/M

Ga0243320_1022018

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

1313

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0243320_1000380	Ga0243320_100038016	F032312	MPKIKDYDEDLSAPKILRRRDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNGDALVCLGFTWFKLLGVALMMLLYPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243320_1000380	Ga0243320_10003803	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLSHSLTYILDQTKEEGRRICIQNIIERNINQENQDENETI
Ga0243320_1000380	Ga0243320_10003807	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0243320_1000380	Ga0243320_10003809	F044555	MKTTNPSSRITLSQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPMVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPGDLVSLS
Ga0243320_1000831	Ga0243320_100083130	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARIVSWLVDTTGDSPKYTIDIINANSGAVAAIALN
Ga0243320_1001454	Ga0243320_100145417	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGILMGIVLPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNS
Ga0243320_1001555	Ga0243320_100155518	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSNINRLNRKI
Ga0243320_1003571	Ga0243320_10035719	F074899	MSGRKQWNKQAATLSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVS
Ga0243320_1010080	Ga0243320_10100803	F047125	MDVVLLLIVLGVMLSGFWAADALDHIRREILRQEGKRRGWWS
Ga0243320_1016881	Ga0243320_10168812	F062845	MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRAYT
Ga0243320_1017631	Ga0243320_10176312	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLRVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0243320_1018928	Ga0243320_10189281	F026489	ENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF
Ga0243320_1022018	Ga0243320_10220184	F047126	LFPKVYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIAYFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Scaffold ID

Protein ID

Family

Sequence

Ga0243320_1000380

Ga0243320_100038016

F032312

MPKIKDYDEDLSAPKILRRRDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNGDALVCLGFTWFKLLGVALMMLLYPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0243320_1000380

Ga0243320_10003803

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLSHSLTYILDQTKEEGRRICIQNIIERNINQENQDENETI

Ga0243320_1000380

Ga0243320_10003807

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF

Ga0243320_1000380

Ga0243320_10003809

F044555

MKTTNPSSRITLSQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPMVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPGDLVSLS

Ga0243320_1000831

Ga0243320_100083130

F055775

MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARIVSWLVDTTGDSPKYTIDIINANSGAVAAIALN

Ga0243320_1001454

Ga0243320_100145417

F052660

MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGILMGIVLPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNS

Ga0243320_1001555

Ga0243320_100155518

F074899

MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSNINRLNRKI

Ga0243320_1003571

Ga0243320_10035719

F074899

MSGRKQWNKQAATLSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVS

Ga0243320_1010080

Ga0243320_10100803

F047125

MDVVLLLIVLGVMLSGFWAADALDHIRREILRQEGKRRGWWS

Ga0243320_1016881

Ga0243320_10168812

F062845

MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRAYT

Ga0243320_1017631

Ga0243320_10176312

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLRVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHNEMGAAFIDYNGTAYVVAVFR

Ga0243320_1018928

Ga0243320_10189281

F026489

ENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF

Ga0243320_1022018

Ga0243320_10220184

F047126

LFPKVYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIAYFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029337: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences