Scaffold Ga0243782_100571

Overview

Basic Information

• Taxon OID: 3300029332
• Scaffold ID: Ga0243782_100571
• Source Dataset Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 042_10_27_stool_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46851
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (27.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location

• Location Name: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F094005	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243782_10057144	F094005	N/A	MKKETIKLKEGDQVIYQDKTLMEKANVVSIDKKNGTAILSNMVIITRTTNLEGQFTRLDGKGNAIILPCTPENEQKYNSFVAYHHSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0243782_10057145	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYTFILVVWFIVFLYGLVS
Ga0243782_10057146	F060985	GGA	MSNIDEKVKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNMGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFSSGFSHIGYGEYHIIRGNRWLKTPIDRIDREYYIFGYWFPIYKKYIPYRIRILKLALKDLERIKKEYSDKV