Scaffold Ga0243238

Basic Information
Taxon OID	3300029326 Open in IMG/M
Scaffold ID	Ga0243238_100116 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-62_Run5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Zhejiang University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029326 Open in IMG/M

Scaffold ID

Ga0243238_100116 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-62_Run5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Zhejiang University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	83799
Total Scaffold Genes	107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (20.56%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

83799

Total Scaffold Genes

107 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (20.56%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location Name	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

China: Hangzhou

Coordinates

Lat. (^o)

30.0

Long. (^o)

120.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243238_100116105	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0243238_10011692	F032312	N/A	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243238_10011695	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESISDFDKIIFVIIIYMKSYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESYVSNSEIELLQEKLDLIREEICKIMGIDPDLQKKGHEENYIFNLNIGSDNQIGFFLQATEL
Ga0243238_10011698	F044555	N/A	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0243238_100116

Overview

Ecosystem & Geography

Associated Families

Sequences