Sample 3300029326

Overview

Basic Information
IMG/M Taxon OID	3300029326 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133112 \| Gp0282375 \| Ga0243238
Sample Name	Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-62_Run5
Sequencing Status	Permanent Draft
Sequencing Center	Zhejiang University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	120925908
Sequencing Scaffolds	11
Novel Protein Genes	14
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032312	Metagenome / Metatranscriptome	180	N
F039198	Metagenome	164	Y
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F056682	Metagenome	137	Y
F064817	Metagenome	128	N
F074964	Metagenome	119	N
F080163	Metagenome	115	N
F081354	Metagenome	114	Y
F082887	Metagenome / Metatranscriptome	113	Y

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F032312

Metagenome / Metatranscriptome

180

F039198

Metagenome

164

F044555

Metagenome / Metatranscriptome

154

F047125

Metagenome / Metatranscriptome

150

F056682

Metagenome

137

F064817

Metagenome

128

F074964

Metagenome

119

F080163

Metagenome

115

F081354

Metagenome

114

F082887

Metagenome / Metatranscriptome

113

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243238_100080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	101387	Open in IMG/M
Ga0243238_100116	Not Available	83799	Open in IMG/M
Ga0243238_101511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9663	Open in IMG/M
Ga0243238_102967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4839	Open in IMG/M
Ga0243238_103271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4343	Open in IMG/M
Ga0243238_103301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	4307	Open in IMG/M
Ga0243238_103589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3944	Open in IMG/M
Ga0243238_105076	All Organisms → Viruses → Predicted Viral	2776	Open in IMG/M
Ga0243238_112683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1196	Open in IMG/M
Ga0243238_118110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	901	Open in IMG/M
Ga0243238_125230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	707	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0243238_100080

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

101387

Open in IMG/M

Ga0243238_100116

Not Available

83799

Open in IMG/M

Ga0243238_101511

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

9663

Open in IMG/M

Ga0243238_102967

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

4839

Open in IMG/M

Ga0243238_103271

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

4343

Open in IMG/M

Ga0243238_103301

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium

4307

Open in IMG/M

Ga0243238_103589

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3944

Open in IMG/M

Ga0243238_105076

All Organisms → Viruses → Predicted Viral

2776

Open in IMG/M

Ga0243238_112683

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium

1196

Open in IMG/M

Ga0243238_118110

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus

901

Open in IMG/M

Ga0243238_125230

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

707

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0243238_100080	Ga0243238_1000806	F039198	MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKKEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC
Ga0243238_100116	Ga0243238_100116105	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0243238_100116	Ga0243238_10011692	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243238_100116	Ga0243238_10011695	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESISDFDKIIFVIIIYMKSYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESYVSNSEIELLQEKLDLIREEICKIMGIDPDLQKKGHEENYIFNLNIGSDNQIGFFLQATEL
Ga0243238_100116	Ga0243238_10011698	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0243238_101511	Ga0243238_1015113	F056682	MKTQSRAGKVANQSVGQSEMYPASFLAFPSKNRSTFPIQKLGKIYENQEVL
Ga0243238_102967	Ga0243238_1029673	F039198	MQITSCQFTNTKYIQIYLTEEELQKQETKEIIKKYKKEKYRVAIFVAGKENYPEILEKIITKQKELKRNVC
Ga0243238_103271	Ga0243238_1032711	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRAIPEKTEDSRLFGVKIF
Ga0243238_103301	Ga0243238_1033012	F082887	MERVKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQIIAVVQGVIGTYLLGQKAISNKEE
Ga0243238_103589	Ga0243238_1035896	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRQEILRQEGKRRGWWS
Ga0243238_105076	Ga0243238_1050765	F082887	MEKLKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGKKAISNKEE
Ga0243238_112683	Ga0243238_1126832	F081354	VKDFSSIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0243238_118110	Ga0243238_1181102	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKERGIETKTADWCAENVIYGGEYKPFGFSTAETLETKKSAKWL
Ga0243238_125230	Ga0243238_1252301	F026489	NQKSASDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF

Scaffold ID

Protein ID

Family

Sequence

Ga0243238_100080

Ga0243238_1000806

F039198

MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKKEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC

Ga0243238_100116

Ga0243238_100116105

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV

Ga0243238_100116

Ga0243238_10011692

F032312

MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0243238_100116

Ga0243238_10011695

F080163

MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESISDFDKIIFVIIIYMKSYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESYVSNSEIELLQEKLDLIREEICKIMGIDPDLQKKGHEENYIFNLNIGSDNQIGFFLQATEL

Ga0243238_100116

Ga0243238_10011698

F044555

MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR

Ga0243238_101511

Ga0243238_1015113

F056682

MKTQSRAGKVANQSVGQSEMYPASFLAFPSKNRSTFPIQKLGKIYENQEVL

Ga0243238_102967

Ga0243238_1029673

F039198

MQITSCQFTNTKYIQIYLTEEELQKQETKEIIKKYKKEKYRVAIFVAGKENYPEILEKIITKQKELKRNVC

Ga0243238_103271

Ga0243238_1032711

F026489

MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRAIPEKTEDSRLFGVKIF

Ga0243238_103301

Ga0243238_1033012

F082887

MERVKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQIIAVVQGVIGTYLLGQKAISNKEE

Ga0243238_103589

Ga0243238_1035896

F047125

MDVVLLLMVLGVMLSGFWAADALDHIRQEILRQEGKRRGWWS

Ga0243238_105076

Ga0243238_1050765

F082887

MEKLKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGKKAISNKEE

Ga0243238_112683

Ga0243238_1126832

F081354

VKDFSSIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL

Ga0243238_118110

Ga0243238_1181102

F074964

MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKERGIETKTADWCAENVIYGGEYKPFGFSTAETLETKKSAKWL

Ga0243238_125230

Ga0243238_1252301

F026489

NQKSASDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029326: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-62_Run5

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences