NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243246_100296

Scaffold Ga0243246_100296


Overview

Basic Information
Taxon OID3300029321 Open in IMG/M
Scaffold IDGa0243246_100296 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from healthy subjects in Hangzhou, China - HD-7_Run1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterZhejiang University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46309
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (91.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location NameChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067845Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0243246_10029623F067845AGGAGMKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR

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