3300029321: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-7_Run1

Overview

Basic Information

• IMG/M Taxon OID: 3300029321
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133112 | Gp0282383 | Ga0243246
• Sample Name: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-7_Run1
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92843791
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067845	Metagenome	125	N
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243246_100296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	46309
Ga0243246_101818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	5617
Ga0243246_102067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	4936

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243246_100296	Ga0243246_10029623	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0243246_101818	Ga0243246_1018182	F097172	MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYRPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243246_102067	Ga0243246_1020671	F097172	DVVTAEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRAILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVAKDKFTTKLKKGHTYVFIIDNSLGKTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEYRK
Ga0243246_102067	Ga0243246_1020672	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVITVEAATKKVTSAYKYHLEGYDKKGYVMDGFSKASFCKDLNSLPAVKTGKTAINVPAVTSSVKSISKEKRNPRYKSFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLAKFRIIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK