Scaffold Ga0183748_1000006

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000006
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170908
• Total Scaffold Genes: 195
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (21.03%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F008723	Metagenome / Metatranscriptome	329	Y
F011971	Metagenome	285	Y
F014791	Metagenome / Metatranscriptome	260	N
F014794	Metagenome / Metatranscriptome	260	Y
F017223	Metagenome	242	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y
F019032	Metagenome / Metatranscriptome	232	Y
F026716	Metagenome	197	Y
F036929	Metagenome	169	Y
F066235	Metagenome	127	Y
F096204	Metagenome / Metatranscriptome	105	N
F096205	Metagenome / Metatranscriptome	105	Y
F099856	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_1000006124	F008105	N/A	MNFFQLQNKLFYSKKNEAGELDSEGEQAFVPFLFNRWLSFYSKELPGFVNETLNKFGNIFDDKQEVYKLYYYLIPRLKWKRISYIKKKKKDKEEIEGLYNIAKNKNISTREIEQYVELDKILCK
Ga0183748_1000006125	F014794	N/A	MAMASIDNLAPTKSLIDLTQKDKGDFGLDDYDLDFIFDDILLVEYVDETDEGDEVIRNGIVVPTNALTKAWRKGRVILAGPDTKHAKEGDIVIFPNNMGVTISNISVRGKGKVAKGIFLNEERMFGICKHKDDNTKSNS
Ga0183748_1000006126	F018622	GAG	LVFVNIKMIIQKATLDTLLQNNVLEVRFPRRIVKAGLAATRRMLCTNSLTLLNSVNGRISLNYFAPKGPPKPYLGPDNLSVAWDIIMQDYRNINCNQVDLIQEIPANDDFWVYFNENIYPMSAQQKLNFMNS
Ga0183748_1000006127	F018815	N/A	MNVSLERVSDFLKPFLLKDIIIRTNKKVLKKGKFKIFQIKQYYINFTLEINGVNKNYEIPYPYSLQNEEDIGVLNYHLSSFIPKGQMTRVKFLDSSSKSKLYDSLVYILPSDGNIIK
Ga0183748_1000006135	F019032	N/A	MANQKNKIIKFIQELSSKNYAEAHKYLKSVIEDKITKKINNATEKPLF
Ga0183748_1000006151	F014791	N/A	MNIKSILTAILLSSGLVFSSNEIYLDQIGSAGIFNISQIGSSNKLGEGNNRSRIEGEEVIFNVATIGNENLIDIDSIGNEEVVNLQVEGDANDFILALEGDQNTVNAFVAGDTNSILIAGDQEDTQKATVNNGLINLNVEGASNDIELLLFDTSYTFTDYFIGGSLNTISSYQEGHGGLIGHSQLVDVFGSSNNLLISQVGSESQFIELSVLGNENTYQIYQTDGSFDPSFMPEQIGNEVNPVNDFSNPDGIPKVPTLVIEPRPLLLEGIVLEQGQ
Ga0183748_1000006170	F096205	N/A	MSKGDKPRPLSISYKEYSDNWEAIFGKKEEQEIDGISMSAEEEIKAEKRMDIIGQNGNEGLHYDDIDG
Ga0183748_1000006171	F096204	N/A	MDDLEYIYPQDLKMWAKCAGRKFLEAEEKIKTLSTKNISASAYWDRDSNIAILLECGKIYTYS
Ga0183748_100000623	F011971	N/A	MARNTMQQSMLNKSRADKFLLVFDVPPILKEFSKKFNQTNDTIIPDSVQFSIFGAAVPEITVPAVDNRYAGNTLYVSSHSKNPYPPVSIGFKIDNEYKNYWAMYSWLNLLHDQREGRYNVREINENQPDFQDYQTDLTIFGKDEFNNNRIKFTYTKAFPTTVEAINYSYTDPDEITSGFTFVYSQLHTEVINF
Ga0183748_100000625	F008723	N/A	MATTIQNFFTKAAENQFSRDFLFRVRNITLTGGLEFVGDNDLVYAKTAALPGRNIDDKVVNYFGQEFHLPGRATYPTGGGYTISFYHDENCALRTKFEAASRIVFNNETSVGEYGMPGTESVINLVQVDKQLNDVRNIELVGASIRNIGDVSYDIADGTGDVLSFDVTFAYHFYRDFATS
Ga0183748_10000065	F099856	N/A	MKRRRPPIKPFEYGKYIIEYRDNVSGLLRFHKERIDNYEDAKKVRDKLLSEGVDKPVIKRIG
Ga0183748_100000659	F017223	N/A	MISLPEDFVILKFFELGYYPKYNKFNNVYQCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVSKSSDTDIINELKEYVPDTKDILESKEGLQKPIQVETLPKDSINLSDEFQLDYYNSNNVVTAVRYLIKERRLDTAVNRPTNLYVSLVDKVHKNRLVIPFINEVGEIEFYQTRTVLNKDNKTKPKYLGKVQAEKTLFNIDKVSNDHDKVYIFEGPLNAFFTKNSIAVAGITERGRSFTQRQEQQLNSLKWYDKVWILDSQWVDQASLVKSEALLKQKEKVFIWPEKFGKRFKDFNDIAMATQIDEIRWQFIEKNTFEGLEGIVKLSEIKKYRNLIKHT
Ga0183748_100000661	F026716	N/A	MKYSKQQIYAVQTGDYVGQMFAVVDIQNDFIGCLSIPKMDNVIVPLEAFDSGRNNDIIKLVEELPNDVYEVVESQYNKNENSDNRRQQFNTPNILYSKESV
Ga0183748_100000662	F066235	N/A	MEDQDHSSHEDEELREMVERALKDNLKEKKKFKKRQDLANRLASILSEYLDSYILLGYDFTGKHIDIKAAATPQQKEALNSFLMKYFASEIQTIKGLNPPGPDEIL
Ga0183748_100000691	F036929	AGAAG	MTTITESSMLESEAVSDPVRGFEFIDLNKCLARSFNQYLLYITENELKLTRKDKNKLGIHFIIKELVKVCKKTNNKKWFYYKTNGKSIEHTLIKRIFNALPTNITYNEGSFSTFLEERDYISFAKKDTSAVSFYKFRLFLRRYELQQIEKEFLSNINIKLSLLP