Scaffold Ga0185543_1036168

Overview

Basic Information

• Taxon OID: 3300029318
• Scaffold ID: Ga0185543_1036168
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1096
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0393
  • Long. (^o): 64.4913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005026	Metagenome / Metatranscriptome	414	Y
F018706	Metagenome	233	Y
F026871	Metagenome	196	N
F059918	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10361681	F059918	N/A	GTAVWGYSVIWNKINELDNSLGRVQHEGTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDAPITSDYQQFERLKYIEKELDRLRDKVE
Ga0185543_10361682	F026871	AGG	MEISHYMFAGVGVAVSILAFFIKRIKVELDDMKERLRQIEISDAGQTKDVEHLTKLAEDRREDVKNIFKKLDAK
Ga0185543_10361683	F005026	N/A	MFELLTLFLTGGGSAAMGSILKGFFGMLTDSRQQKYEIEMAREARNNEFAIKFQESLNSGDGGAFTRATRRMLALIGMGTISFVTCITAIYPSVPLLSTTNITGEGKTEILFGLLSFPSEQANLVVTTGHLCLFQTSVVLPMIVGFYFTPGGRR
Ga0185543_10361684	F018706	GGAGG	MMFDRASVLGMSGTAATFGLSTIDTFLGIAVGAVTLVYMSIKLYQEI