NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242781_100374

Scaffold Ga0242781_100374


Overview

Basic Information
Taxon OID3300029313 Open in IMG/M
Scaffold IDGa0242781_100374 Open in IMG/M
Source Dataset NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_10_stool_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72457
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (93.15%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076190Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0242781_10037453F076190N/AVRTAGGSITISAKNVFMAASRVSGRVWSLVRITVPNGLKYVKIRVEKPQNNSLYPYFQREPL

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