Scaffold Ga0183683_1001387

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1001387
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10002
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F091012	Metagenome	108	Y
F098234	Metagenome / Metatranscriptome	104	Y
F106104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10013872	F045198	N/A	MKLEAEHIEQIASYMADSLEDHLDIVFWDGIARVLDEFDIEYEDIGDISDEDCEAIVNETRILFSPKNDLPL
Ga0183683_10013875	F098234	N/A	MNKEQLENRVKELTVLIEEASGNVKNLVDEQAAFTKRLDDLNKPKLSHAQMDQVQHIVESACEVFDLDIDECDYNIEIDYDNRVVVNDFDWSRCQEDLTTHIMERLENVFAVAEEE
Ga0183683_10013877	F091012	N/A	MENLWQKLKPTVKTKILANKDEYPYLVEDVKSKLKSSNFWSELPINTVRNVVSFTHDSVYDISMTDFLWGDSFIKKA
Ga0183683_10013879	F106104	N/A	MTTNEIEKQLKRKAEEQISDYARDIVDGLAMFGKDNTGINRSGLHWYSKRQKPHKKYTSDPEPEDPFCHYDWSELAQLIRRNMEHNLLDQMVERKAKELLSKIDLLG