Scaffold Ga0183683_1000322

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000322
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28399
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (65.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051146	Metagenome / Metatranscriptome	144	N
F057329	Metagenome / Metatranscriptome	136	N
F061782	Metagenome	131	N
F062776	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100032210	F051146	GGA	MTKDEFIYWTGWLKVRWPNAQLGEFTVKSLYKDFELFDDDVFGKVLLDYFDSGNEFLDWSKIKKRCKEYQTQVFSDKAQQIREQKSLKDKAIDPPSSLQSYLKMLGYKTFAEAVFYKTKDLYRYGGLRDWQRKLFEPYRKLSYDEAKTKGWRYGIGIEIDDRRK
Ga0183683_100032214	F062776	AGGAG	MDKYSNPDVFIVLGGFVAIFLLGALLGEVAIFIAKMLGYEDVADQPNVDFMQRLQDGEVLNADNMFIKE
Ga0183683_100032220	F061782	AGAAG	MKKIYNGIIAILKETAAQTFTILGFAISWFLLTGTAKDIVGIMILISFGVWFATINFRK
Ga0183683_10003225	F057329	AGG	MNAGYDDVKELVMYVMGLNDWLQDREPVEPDAKNNSLGGMNFTINWLDHTKSRYCIRLNTDNTYDMQIFQYQNYKQLGLAIERSLPRESILMLLSTTYQEITSQSNQVLDNLKFEISKETQEILKKQN