Scaffold Ga0183683

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1000291 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029309 Open in IMG/M

Scaffold ID

Ga0183683_1000291 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29687
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (39.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29687

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (39.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

South Pacific Ocean: TARA_100

Coordinates

Lat. (^o)

-13.0023

Long. (^o)

-95.9759

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F009330	Metagenome / Metatranscriptome	319	N
F014253	Metagenome / Metatranscriptome	264	N
F036970	Metagenome / Metatranscriptome	169	Y
F042877	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100029114	F036970	N/A	MTKFRQWFADVNRAIVAQMAVQKVTQKDLADHLGVHAATMNRKLQDPGLFTAGEFGAVCERLNIDLNNPKSYGAGAS
Ga0183683_100029119	F042877	GGA	MTQGILAAIAVLSFAQLGVEYFQEDQVRIFGLVIFLLACLGVVA
Ga0183683_100029121	F009330	N/A	VTLNRYLERNYTDLLQAAERIAGKDGPDLLHEVILQLYQTKAETLDGLLERGQMKYWALRVMVNNYNSKTSRYHYKWRKDIERRRKFSRQIRDWWDGDGVAAHRDELLTHIETQLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHTLYTTIRRVRKRIQGTGRQNREAHQSNGDR
Ga0183683_10002913	F001668	N/A	MATVYLPVKPIEGMDSAERAEALDAEVWRLRRPLSLQSPQDVTKYYYPRITHPNTGQVAIVGNTTEEVRISTDVDLTNMLALLPEVPQEEKDMLVQFVNANRGGTIPFGQLIPSTSEQLTEEEAKAIGWLPDPIDPS
Ga0183683_100029143	F014253	N/A	MIVVVKNNPGSVQNTVYLTPKEKRGAANVALYGATISALGMELKSLTTDKTAMVNARVLTVTDRFTTFVFDAQVPTADTSVDLSGPSWPEGYFQYRIVERSSSSDVQAISSTDVILEEGLGYLVRGLQTGILLTESGDNLTTEEPGMILKEDATATTEAYQETTYASHTDDSSTFTFYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183683_1000291

Overview

Ecosystem & Geography

Associated Families

Sequences