Scaffold Ga0167469_100350

Overview

Basic Information

• Taxon OID: 3300029292
• Scaffold ID: Ga0167469_100350
• Source Dataset Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021218-37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47018
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (19.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location

• Location Name: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F101357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167469_10035012	F044555	N/A	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKI
Ga0167469_10035017	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHILSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0167469_10035022	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSTYMRLFGMYSDNPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0167469_1003505	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGYEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0167469_1003506	F060985	GGA	MSNIDEKAKNNSTIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCKIFDYQNHGFWHSVIKPWFQPERFSITNIWFNSGFSFIGYGEYHTIRGNRWLKIPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD