Sample 3300029292

Overview

Basic Information
IMG/M Taxon OID	3300029292 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193088 \| Ga0167469
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021218-37
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	157976790
Sequencing Scaffolds	16
Novel Protein Genes	20
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F042936	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F071325	Metagenome	122	N
F084124	Metagenome	112	Y
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F090513	Metagenome	108	N
F101355	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F029444

Metagenome

188

F032312

Metagenome / Metatranscriptome

180

F042936

Metagenome

157

F044555

Metagenome / Metatranscriptome

154

F060985

Metagenome / Metatranscriptome

132

F064817

Metagenome

128

F067720

Metagenome

125

F067845

Metagenome

125

F068811

Metagenome

124

F071325

Metagenome

122

F084124

Metagenome

112

F087335

Metagenome

110

F087336

Metagenome

110

F088914

Metagenome

109

F090513

Metagenome

108

F101355

Metagenome

102

F101357

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0167469_100116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	101783	Open in IMG/M
Ga0167469_100340	Not Available	47783	Open in IMG/M
Ga0167469_100350	All Organisms → cellular organisms → Bacteria	47018	Open in IMG/M
Ga0167469_100421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	42216	Open in IMG/M
Ga0167469_100476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	37956	Open in IMG/M
Ga0167469_100613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	31135	Open in IMG/M
Ga0167469_100728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	27332	Open in IMG/M
Ga0167469_100915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	22672	Open in IMG/M
Ga0167469_101103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	19248	Open in IMG/M
Ga0167469_103018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8611	Open in IMG/M
Ga0167469_105415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5156	Open in IMG/M
Ga0167469_106605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4253	Open in IMG/M
Ga0167469_108046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3477	Open in IMG/M
Ga0167469_110070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2739	Open in IMG/M
Ga0167469_112703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2118	Open in IMG/M
Ga0167469_119195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1305	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0167469_100116

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

101783

Open in IMG/M

Ga0167469_100340

Not Available

47783

Open in IMG/M

Ga0167469_100350

All Organisms → cellular organisms → Bacteria

47018

Open in IMG/M

Ga0167469_100421

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus

42216

Open in IMG/M

Ga0167469_100476

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

37956

Open in IMG/M

Ga0167469_100613

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

31135

Open in IMG/M

Ga0167469_100728

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

27332

Open in IMG/M

Ga0167469_100915

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

22672

Open in IMG/M

Ga0167469_101103

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

19248

Open in IMG/M

Ga0167469_103018

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

8611

Open in IMG/M

Ga0167469_105415

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

5156

Open in IMG/M

Ga0167469_106605

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

4253

Open in IMG/M

Ga0167469_108046

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

3477

Open in IMG/M

Ga0167469_110070

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2739

Open in IMG/M

Ga0167469_112703

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2118

Open in IMG/M

Ga0167469_119195

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1305

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0167469_100116	Ga0167469_10011662	F087335	MIEIYFNDANLLPENREEEQYAEAALNNILAGKTADTGMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEEMYQRVSNYD
Ga0167469_100340	Ga0167469_10034012	F067720	MESTTYRHLGDVTGMFAAQEQFRDITKMVTKRHQFTVLGTMVRNAGQLPQPFWLGAARGGGSCSAARCAART
Ga0167469_100350	Ga0167469_10035012	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKI
Ga0167469_100350	Ga0167469_10035017	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHILSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0167469_100350	Ga0167469_10035022	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSTYMRLFGMYSDNPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0167469_100350	Ga0167469_1003505	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGYEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0167469_100350	Ga0167469_1003506	F060985	MSNIDEKAKNNSTIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCKIFDYQNHGFWHSVIKPWFQPERFSITNIWFNSGFSFIGYGEYHTIRGNRWLKIPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0167469_100421	Ga0167469_10042141	F084124	TKGNKHHFHSQRNALTMFLAFLFIMAFACFNKLSLSTQTAWMFAPDKLLYRKILWALPKPAIFEKIE
Ga0167469_100476	Ga0167469_1004765	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTADTEMCILPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLITCVTDETVEEVYQRVSNYDFDEPCAGNMPS
Ga0167469_100613	Ga0167469_1006131	F029444	MGVSERLTGFELEDLMSWTVSNLQRPFREDFSLEKSGSIAEKESQIFGRHFVGFDGPKKAAPFFNF
Ga0167469_100728	Ga0167469_10072823	F026489	VFHVEQGKGKEDIAERCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0167469_100915	Ga0167469_10091513	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFKKVEQEGALTPPYLGKVYFRSRLRGK
Ga0167469_101103	Ga0167469_10110311	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0167469_103018	Ga0167469_10301810	F071325	KVLLALLSDSSIIISKVVLFVKHFFRYFLSFPNAFLKAFLPHAIRFPVAFLLVHRFYLAFEELLSCATVYL
Ga0167469_105415	Ga0167469_1054155	F071325	SIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAIRFPAAFLLVHRFYLAFEELLSCATAY
Ga0167469_106605	Ga0167469_1066052	F088914	LISFIPHLTAAVGRILPVCSGFFAFWSRKEGVNYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPDTPKENRKNPGKFIVFSAWYAAKALEMDVK
Ga0167469_108046	Ga0167469_1080464	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFYFFKIYLKKIDFFQNIA
Ga0167469_110070	Ga0167469_1100704	F067845	MKHWKNLLVCLLTGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0167469_112703	Ga0167469_1127032	F087336	MHCLLRGMVAELEQVSKAFRAAGNQRRAATKERIKDDAIGRGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0167469_119195	Ga0167469_1191952	F068811	MDQDGSEHNICSNREGLCPGKEPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRI

Scaffold ID

Protein ID

Family

Sequence

Ga0167469_100116

Ga0167469_10011662

F087335

MIEIYFNDANLLPENREEEQYAEAALNNILAGKTADTGMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEEMYQRVSNYD

Ga0167469_100340

Ga0167469_10034012

F067720

MESTTYRHLGDVTGMFAAQEQFRDITKMVTKRHQFTVLGTMVRNAGQLPQPFWLGAARGGGSCSAARCAART

Ga0167469_100350

Ga0167469_10035012

F044555

MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKI

Ga0167469_100350

Ga0167469_10035017

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHILSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF

Ga0167469_100350

Ga0167469_10035022

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSTYMRLFGMYSDNPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV

Ga0167469_100350

Ga0167469_1003505

F032312

MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGYEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0167469_100350

Ga0167469_1003506

F060985

MSNIDEKAKNNSTIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCKIFDYQNHGFWHSVIKPWFQPERFSITNIWFNSGFSFIGYGEYHTIRGNRWLKIPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD

Ga0167469_100421

Ga0167469_10042141

F084124

TKGNKHHFHSQRNALTMFLAFLFIMAFACFNKLSLSTQTAWMFAPDKLLYRKILWALPKPAIFEKIE

Ga0167469_100476

Ga0167469_1004765

F087335

MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTADTEMCILPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLITCVTDETVEEVYQRVSNYDFDEPCAGNMPS

Ga0167469_100613

Ga0167469_1006131

F029444

MGVSERLTGFELEDLMSWTVSNLQRPFREDFSLEKSGSIAEKESQIFGRHFVGFDGPKKAAPFFNF

Ga0167469_100728

Ga0167469_10072823

F026489

VFHVEQGKGKEDIAERCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF

Ga0167469_100915

Ga0167469_10091513

F042936

MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFKKVEQEGALTPPYLGKVYFRSRLRGK

Ga0167469_101103

Ga0167469_10110311

F090513

MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT

Ga0167469_103018

Ga0167469_10301810

F071325

KVLLALLSDSSIIISKVVLFVKHFFRYFLSFPNAFLKAFLPHAIRFPVAFLLVHRFYLAFEELLSCATVYL

Ga0167469_105415

Ga0167469_1054155

F071325

SIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAIRFPAAFLLVHRFYLAFEELLSCATAY

Ga0167469_106605

Ga0167469_1066052

F088914

LISFIPHLTAAVGRILPVCSGFFAFWSRKEGVNYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPDTPKENRKNPGKFIVFSAWYAAKALEMDVK

Ga0167469_108046

Ga0167469_1080464

F101355

MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFYFFKIYLKKIDFFQNIA

Ga0167469_110070

Ga0167469_1100704

F067845

MKHWKNLLVCLLTGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR

Ga0167469_112703

Ga0167469_1127032

F087336

MHCLLRGMVAELEQVSKAFRAAGNQRRAATKERIKDDAIGRGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP

Ga0167469_119195

Ga0167469_1191952

F068811

MDQDGSEHNICSNREGLCPGKEPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029292: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021218-37

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences