Scaffold Ga0168678_100140

Overview

Basic Information

• Taxon OID: 3300029217
• Scaffold ID: Ga0168678_100140
• Source Dataset Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002661-50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117655
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (91.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location

• Location Name: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F055739	Metagenome	138	N
F068856	Metagenome	124	N
F102166	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0168678_1001403	F043413	AGGGGG	MTERELREKLQFAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDETDSWSDSPFAFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRQHIITVTYGSLVEYQYAAEAAMLADGNITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDTCHPDAEKGFTLELQE
Ga0168678_10014037	F102166	GAGG	MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVNLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMGEMVDYITEIANGESADNVFAMWQADIGAV
Ga0168678_10014042	F068856	AGGAG	MKRLTSILLALLMLVGMALAEEKSDAALGDWYALNTENEAICLTLREDGTFCYDSREGTWRKNEDGEYLLSYNNSAPSLLELLDGIGDWDDWEAPEADMTARLTETGLDVSYYGSPEGMVIHMVRDAEELQNVRKPKTDTPLEAFAGTWTMETVFAGAMQMTYTPDKGERLAFCTIDGLTMLPGAALGNFTEGTSYPMTLEDGKLHTTILMQMTEEETLDFDMTFFQTADGSLYATLRLSDVPDNPTTMFLLIPME
Ga0168678_1001405	F055739	AGGAGG	MTEQQLREKLQFAYGTMPDATRAAFEHSLTHHRAPETHRSIGLNRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRVRGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRVYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE