Scaffold Ga0168683_100322

Overview

Basic Information

• Taxon OID: 3300029207
• Scaffold ID: Ga0168683_100322
• Source Dataset Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002666-35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51271
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location

• Location Name: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087336	Metagenome	110	N
F088914	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0168683_10032214	F088914	N/A	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDRLFSVPYTPKENRKNPGEFIVFSAWYAAKALEMNVK
Ga0168683_10032238	F087336	GAGG	MVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHIRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP