Scaffold Ga0167843

Basic Information
Taxon OID	3300029202 Open in IMG/M
Scaffold ID	Ga0167843_103961 Open in IMG/M
Source Dataset Name	Polluted lake sediment microbial communities from Telengana, India - LAKES1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Gothenburg
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029202 Open in IMG/M

Scaffold ID

Ga0167843_103961 Open in IMG/M

Source Dataset Name

Polluted lake sediment microbial communities from Telengana, India - LAKES1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Gothenburg

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3206
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3206

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Polluted Lake Sediment → Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Polluted Lake Sediment → Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India

Source Dataset Sampling Location
Location Name	India: Telengana
Coordinates	Lat. (^o)	17.5741667	Long. (^o)	78.3563333	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

India: Telengana

Coordinates

Lat. (^o)

17.5741667

Long. (^o)

78.3563333

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021528	Metagenome / Metatranscriptome	218	N
F051104	Metagenome / Metatranscriptome	144	Y
F069750	Metagenome / Metatranscriptome	123	N
F078674	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167843_1039613	F051104	AGGAG	LFELRIAEAIEEEAVLSQDLIHEGFSHAFKAGELLQEVKSMLHSKEDLEQWLEQNCSKIEREVAFSCLRLFNGETVKVEATHKREENHKRERG
Ga0167843_1039614	F021528	AGGAG	MIDTLKLMLNEYEITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNTDNWNLTLKPLPAGNRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNMETGGLPPTMRFEHRLLNKQKVQNVYGFGKVAELFKGGYEVVKEKQVESWESSLFNFTAEELVLIGSKQLEQEMKRFKEKSPSGWFSKFLKAYGAYYLASFAGKEAVIEALKNAEAERTMIWRAVQKFEEAERELMVLKQEEGSKKTLGSLYEELRRKVCLN
Ga0167843_1039615	F078674	AGGAG	METVKKAVENRKAPFEVEGKAGGRVISLRVTEKMEQLLEEQAQEWNMSISDTLRGILNFYFLPPLLYEAWEKKVQALIDLDTEQKGENRADMSAPTHAQRIEPVFCDSEEAEEYANFIHELWDKNLRYWEILREEAVTANRIAVKQLTETAEALKRCKYALPERAEVEP
Ga0167843_1039616	F069750	AGGAG	MESMEIYEKKREGSLIIGEFPLQENSFFVEGEKFLIKERKSQKGKKTQYYLIRLQPFQYVSSLFPTGEEESFTFDYEQKLYRLERKEHSVTLKFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0167843_103961

Overview

Ecosystem & Geography

Associated Families

Sequences