Sample 3300029202

Basic Information
IMG/M Taxon OID	3300029202 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127405 \| Gp0192229 \| Ga0167843
Sample Name	Polluted lake sediment microbial communities from Telengana, India - LAKES1
Sequencing Status	Permanent Draft
Sequencing Center	University of Gothenburg
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300029202 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0127405 | Gp0192229 | Ga0167843

Sample Name

Polluted lake sediment microbial communities from Telengana, India - LAKES1

Sequencing Status

Permanent Draft

Sequencing Center

University of Gothenburg

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	76379555
Sequencing Scaffolds	19
Novel Protein Genes	26
Associated Families	13

Dataset Contents

Total Genome Size

76379555

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium

All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium

All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga

Ecosystem Assignment (GOLD)
Name	Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Polluted Lake Sediment → Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India

Ecosystem Assignment (GOLD)

Name

Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India

Type

Environmental

Taxonomy

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Polluted Lake Sediment → Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → polluted lake → lake sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → polluted lake → lake sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	India: Telengana
Coordinates	Lat. (^o)	17.5741667	Long. (^o)	78.3563333	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

India: Telengana

Coordinates

Lat. (^o)

17.5741667

Long. (^o)

78.3563333

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F021528	Metagenome / Metatranscriptome	218	N
F029768	Metagenome / Metatranscriptome	187	N
F051104	Metagenome / Metatranscriptome	144	Y
F069750	Metagenome / Metatranscriptome	123	N
F070092	Metagenome	123	N
F073597	Metagenome / Metatranscriptome	120	Y
F074914	Metagenome / Metatranscriptome	119	N
F077264	Metagenome / Metatranscriptome	117	Y
F078674	Metagenome / Metatranscriptome	116	Y
F078757	Metagenome / Metatranscriptome	116	N
F090061	Metagenome / Metatranscriptome	108	Y
F104571	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0167843_100796	All Organisms → cellular organisms → Bacteria	8829	Open in IMG/M
Ga0167843_101203	All Organisms → cellular organisms → Bacteria	6803	Open in IMG/M
Ga0167843_102716	All Organisms → Viruses → Predicted Viral	4123	Open in IMG/M
Ga0167843_103087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	3785	Open in IMG/M
Ga0167843_103961	All Organisms → cellular organisms → Bacteria	3206	Open in IMG/M
Ga0167843_103975	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	3201	Open in IMG/M
Ga0167843_104162	All Organisms → Viruses → Predicted Viral	3095	Open in IMG/M
Ga0167843_104300	All Organisms → Viruses → Predicted Viral	3025	Open in IMG/M
Ga0167843_104410	All Organisms → Viruses → Predicted Viral	2970	Open in IMG/M
Ga0167843_104713	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	2833	Open in IMG/M
Ga0167843_104722	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	2828	Open in IMG/M
Ga0167843_105398	All Organisms → cellular organisms → Bacteria	2557	Open in IMG/M
Ga0167843_105520	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
Ga0167843_105630	All Organisms → Viruses → Predicted Viral	2479	Open in IMG/M
Ga0167843_107338	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	2026	Open in IMG/M
Ga0167843_107477	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
Ga0167843_108289	All Organisms → Viruses → Predicted Viral	1841	Open in IMG/M
Ga0167843_108455	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
Ga0167843_119042	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	875	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167843_100796	Ga0167843_1007967	F090061	MISQNILKELNKTMIRYRAGLIDLQRCRQELSLLIAMLKAYEDTVMEEKLDRIQAILEER
Ga0167843_101203	Ga0167843_10120310	F077264	MARFAKIWNLRADSAWIELVKIQAIDARRSNPGAYIRDLVWIISQNPTIKNRIIESLQGVGYGNDR
Ga0167843_101203	Ga0167843_1012036	F077264	MALSKIWNLRADSAWIEAVKIQAIEAGRSSPGAFVRDLVWALANNPTIKNRIFEVMQGVRYGNDR
Ga0167843_102716	Ga0167843_1027164	F077264	PPGPERFVHMALKLIWNLRADSAWIELVKVQAIETGRSSPGAFVRDLVWTLSKNPTIKNRIFEAMQGVQYGQR
Ga0167843_103087	Ga0167843_1030877	F073597	MDTGNFVLQGNQFIAGESKFVFRKRKKATVNKPMEYLIQLTPAFKYISSLFPAGEEGLYTFDFQSQMYILKKEVEQVIITEGE
Ga0167843_103961	Ga0167843_1039613	F051104	LFELRIAEAIEEEAVLSQDLIHEGFSHAFKAGELLQEVKSMLHSKEDLEQWLEQNCSKIEREVAFSCLRLFNGETVKVEATHKREENHKRERG
Ga0167843_103961	Ga0167843_1039614	F021528	MIDTLKLMLNEYEITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNTDNWNLTLKPLPAGNRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNMETGGLPPTMRFEHRLLNKQKVQNVYGFGKVAELFKGGYEVVKEKQVESWESSLFNFTAEELVLIGSKQLEQEMKRFKEKSPSGWFSKFLKAYGAYYLASFAGKEAVIEALKNAEAERTMIWRAVQKFEEAERELMVLKQEEGSKKTLGSLYEELRRKVCLN
Ga0167843_103961	Ga0167843_1039615	F078674	METVKKAVENRKAPFEVEGKAGGRVISLRVTEKMEQLLEEQAQEWNMSISDTLRGILNFYFLPPLLYEAWEKKVQALIDLDTEQKGENRADMSAPTHAQRIEPVFCDSEEAEEYANFIHELWDKNLRYWEILREEAVTANRIAVKQLTETAEALKRCKYALPERAEVEP
Ga0167843_103961	Ga0167843_1039616	F069750	MESMEIYEKKREGSLIIGEFPLQENSFFVEGEKFLIKERKSQKGKKTQYYLIRLQPFQYVSSLFPTGEEESFTFDYEQKLYRLERKEHSVTLKFL
Ga0167843_103975	Ga0167843_1039753	F078757	MNRKLKTLPKRMVNPFLDSIRDVSLSTAEHELIDALSAVPRRAEAINLFDFGRKIRDEDVETVESAFYAVAKIKNRLPER
Ga0167843_104162	Ga0167843_1041622	F012026	MNLRELQASIANIIGKRAEAVDRLNRLTTVEDRFNPENITAINAFKQAITTLSEELTRLERERAELLEVESAARREYVAALDAYDEIYGRFPNAEKEAGELLKRYAKITEAAEKARSIVLEKMNALTAVAGGFLPLPPAPSHAWRTYAKDYAFEIEHKGGD
Ga0167843_104300	Ga0167843_1043001	F029768	MTDTMTETAVAVNALYSEQELKKDSQVSVRLESGLFEALETQTEVWGFKSISQTVRAILTFYFLPVVYELELKNRSISEHKEFLKEKQEEGFSLEQARANYFTFQVVEYLEFLEQAMVMARHSLKFMESTSDKMNGILKETVNKIEQAMKELEQVAE
Ga0167843_104410	Ga0167843_1044103	F073597	METGCFVLQGNQFVAGGNKFVLKRRKKPTPNKPELFLIQLQPFKYISSLFPAGEEGLYTFDYERQLYILKKGEAQIVITEEE
Ga0167843_104410	Ga0167843_1044104	F029768	MLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKENYFLFQTVEYLEFLEQAKVMSNHSIRFMERATEKMNSILQETEKKIEQAIKEIEQEQEK
Ga0167843_104713	Ga0167843_1047134	F073597	MNTGNFLLQGSQFIAGGNKYLFRRRKKATVNKPPEYLIQVAPSFRYISSLFPAGEEGLYTFDFEKQVYVLKKEKEQVIITEGE
Ga0167843_104722	Ga0167843_1047224	F073597	MDTGNFLLQGSQFFAGGNKYVFRRRKKPTVNKPPDYLIQLTPSFKYISSLFPAGEEGLYTFDFEKQVYVLKKEKEQVIITEGE
Ga0167843_105398	Ga0167843_1053981	F021528	MIDTLKLMLNDYEISDSSEIRVQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNSENWNLTLKPMVGGVIATGAFLQFSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKEKGVHTNIFEAYMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAVQRGYGTTFLLSNTQQEFCVYDKLEEMRERKLETNNLPNTMRFEHRLLNKQKIQNVYGISKVADLFHGGYEVVKEKQVESWKGSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVVIEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSNKTLGVLYEELKRKVCLN
Ga0167843_105520	Ga0167843_1055204	F051104	LFELRIAEVIEGEAVLSQKLIEEGFLHAFKAGELIQEVKSMLHSEEALEQWLEQNCSKVERQVAINCLKLFNGETVKVEATTKEGKNQKRERG
Ga0167843_105630	Ga0167843_1056304	F104571	MIDTLKVFTDDYEIRENAGLFVQPATVNYETGETKEYNLFRGSNGKWVTGAKAYVNTGNYQLTIKPIGNGDSGKVMLFLQTSLPKIIHGENYQALNNDETICAIDAIENDLKHRGVGINLQECKTSRIDMFRMAMANNPFSSYAPMFRLLNAKRSHTTDYGTTFTWANTQRELCVYDKAVEMKHRGITSSALPVNAIRFEYRLKTSKVCKKETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALVTVSANELERGFSVYSKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLFDEYRMNFEMARGGLGDSTLKDFYLELKDKILPDNRTITGD
Ga0167843_107338	Ga0167843_1073383	F074914	MKISTLLRKANAALCKIESLNPEEIDREVFKMEIEKARAIAYLVRTVSEIIAKNEMEDRIAALENAIMQEKAS
Ga0167843_107477	Ga0167843_1074772	F021528	MIDTLKLMLNEYEISDDSEIRVQPASYELGTGSKLEYPLFQTPSHGAHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSVGEEGTKAVLKKVERELKEKGVDTPLNEASLSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLEEMRERKLETTNLPNTMRFEHRLLNKQKVQNVYGFGKVEDLFHGGYEVVKEKQVESWKGSLFNFTAEELVVLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELLVLKQEEGSNKTLGVLYEELRRKVCLN
Ga0167843_107477	Ga0167843_1074773	F078674	MEALKKAVENRKAPFEIEGKAGDRIISLRVSEKMGELLEEQAQEWDKSISDTLRGIINFYFLPPLLLEAWEKKVEALIELDIKTVGENREVMNAPTQAQRIEHVLVDGEEAEEYAHFINELWNKNVKYWEILREEALSMSNTAVKRLKEELEALENALTWEDIAKRFEEKEQS
Ga0167843_108289	Ga0167843_1082896	F078757	VERPIPKRMVRPFLDSIRDVSLSTAERELIETLSAVPRRAEAINLFDFGRKIRDEDVETVESAFYAVAKIKNRLPER
Ga0167843_108455	Ga0167843_1084552	F069750	LIAGEYILQENSFFVEGERFLIRERKNQKGKKTQYYLIRLQPFQYVSSLFPTGEEESYTFDYEQKLYKLERKEHSVTLKYI
Ga0167843_108455	Ga0167843_1084555	F051104	VLSQDLIQEGFSHAFKAGELIQEVKSMLHSEGDLEQWLEKNCSKVERQVAFNCLKLFNGETVKVEATTKEGKNQKRERG
Ga0167843_119042	Ga0167843_1190421	F070092	MAINDRLKPVMELLETNRQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGILWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPYENNPMYKQLKSQHNKVSVLAGFKDMLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029202: Polluted lake sediment microbial communities from Telengana, India - LAKES1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences