Scaffold Ga0167512_100368

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167512_100368

Scaffold Ga0167512_100368

Overview

Basic Information
Taxon OID	3300029201 Open in IMG/M
Scaffold ID	Ga0167512_100368 Open in IMG/M
Source Dataset Name	Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002619-34
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26965
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location Name	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103430	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167512_1003686	F103430	AGGAG	MIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI

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