3300029201: Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002619-34

Overview

Basic Information

• IMG/M Taxon OID: 3300029201
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193165 | Ga0167512
• Sample Name: Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002619-34
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111724315
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F076191	Metagenome	118	N
F084362	Metagenome	112	N
F095630	Metagenome	105	N
F101360	Metagenome	102	N
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167512_100368	Not Available	26965
Ga0167512_100794	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	16205
Ga0167512_103799	Not Available	5117
Ga0167512_104151	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4785
Ga0167512_104846	All Organisms → Viruses → Predicted Viral	4256
Ga0167512_105154	All Organisms → cellular organisms → Bacteria	4040
Ga0167512_105916	All Organisms → cellular organisms → Bacteria	3628
Ga0167512_106813	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3211
Ga0167512_106989	All Organisms → cellular organisms → Bacteria	3141
Ga0167512_134399	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	577

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167512_100368	Ga0167512_1003686	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI
Ga0167512_100794	Ga0167512_10079410	F076191	MKIIAEDPAEEALLWRIKALSDELVNQDNRSTDMPVWTILDNNKAGKDYGAVMYFTGKAAERHIDENDHHYENPTTYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
Ga0167512_103799	Ga0167512_1037996	F084362	MSLMNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDVAVKINNKSAGSLKDDKISETEAEQKGFWWEK
Ga0167512_104151	Ga0167512_1041513	F046433	MIELPTSPGALSELSPVAPPKLLSQSQDASRDNLVVYVKEDNYLGTKTSDPSFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMENCAKELIDELTFLGVLELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKTLFLDDWIIGGDQVRERISVFEAYNNPGTHKVSVLVVAASSNYIDNGIGADSLWGEATYPVEACYRLKNSPDAEGMSRVTGIHSSTDNTFGYEVDGIAYCAIKRGILKGEGIDELNLPALANIVRPYRNGKNFDGLSRFRQLLEKE
Ga0167512_104846	Ga0167512_1048468	F084362	MSLMNCTFTVRWSDEKNKPHSKTYETEVAAKKAKKWPLEHGVRSVDIAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK
Ga0167512_105154	Ga0167512_1051546	F046433	MIELSTSSGVLDRLNPTTLPDLSSQAKDISRASPVSYVCTDEYLDTMTSDPCFRWMQRKTTEYEALNEFLYFMEMVEPYLPDYRKGDARELRSELTFLGMPELHFAATALAKRLRHHLEVDNKPVYVDVGNSLSQCRDDKEMKSSQYILSLVLSKFPDDEFEECEGRLKVYGGRGGIDKSSKILFLDDWIVSGNQVKERIAGFEVDNDPEDHEASVLVMAASGDYLDGGISAYSQYGGATYPVEACYRLKNSPDAEGMSRVTGIHSS
Ga0167512_105916	Ga0167512_1059164	F095630	MMYSSLYKIVENNGLLAHIYEHLLAQYVLKYLQDKGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGSATLRAAAECGIEMNRLVTELVQDELLHKLSAVQSSAWRQQSDITYRQADDKSSVNTLFRIPYIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVHQLKCEFMEYVQFLSASSFCDNLQAALVRCSHNYEQVLLDRDTLNSILGGCVVGGRGWLEMADNALIGQILKAIEIDVYDI
Ga0167512_106813	Ga0167512_1068132	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDIILTAKTYGDTCYMDVELYNPAVPNAYNEALRAFDKHAIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQIIAAIQLDVYDI
Ga0167512_106989	Ga0167512_1069896	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKNLRVYRPHSLHERILSRLRRKLFRGNPKEFYIAIDKWLADTRAHHSS
Ga0167512_134399	Ga0167512_1343991	F101360	VSKENALRRAAIAAHIAKVASQEKKRALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQAGEVPDGVEVVQGDPRISVRISGAQEEAIRELISTGDVSLLEIEGGDA