Scaffold Ga0168029_101057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168029_101057

Scaffold Ga0168029_101057

Overview

Basic Information
Taxon OID	3300029174 Open in IMG/M
Scaffold ID	Ga0168029_101057 Open in IMG/M
Source Dataset Name	Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2600
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Source Dataset Sampling Location
Location Name	USA: Chicago
Coordinates	Lat. (^o)	41.87	Long. (^o)	-87.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085584	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168029_1010574	F085584	AGG	MKKPLILSLEDENTSLFSKQYLSIPDLHEEIEKRLEDLKTMDKRKKKQLMQAKEDVNFLIDMYNAKAKFKTYNKVK

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