Scaffold Ga0168029_100145

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168029_100145

Scaffold Ga0168029_100145

Overview

Basic Information
Taxon OID	3300029174 Open in IMG/M
Scaffold ID	Ga0168029_100145 Open in IMG/M
Source Dataset Name	Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7955
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Source Dataset Sampling Location
Location Name	USA: Chicago
Coordinates	Lat. (^o)	41.87	Long. (^o)	-87.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008183	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168029_1001452	F008183	GAGG	MAFENAEIDPVKYGVLWQKVQDMDKKVDKMERQLEQLLELANKGKGGLWFGMTVASAVSGFVGFVISHWKGN

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