Scaffold Ga0168039_10642

Overview

Basic Information

• Taxon OID: 3300029145
• Scaffold ID: Ga0168039_10642
• Source Dataset Name: Aquariaum water viral communities from Chicago, USA - Stingray Touch - STA1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1747
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Source Dataset Sampling Location

• Location Name: USA: Chicago
• Coordinates
  • Lat. (^o): 41.87
  • Long. (^o): -87.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0168039_106421	F006550	GAG	MARIFNEKKADYKGMQLWLNPADESVYATERAPTHSFAEAGGYAIYDFKKHFANKEAGKDSMGSNQYMHDAFVDPEFKATAEDYIADIKAGGRQRTAALRSFTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFGGMTQLDEGQLGQLKELTYSRQNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKIEQKQSFDVIAAANSGLTAKAAVGVWDTFVASTDRSTNSPLIDLGIVKLLIEGSGVGGRMNRVGMHPLDFAKYMSNTFVRGVASTKPSEVTFEPGTRELPGFPEAGLVLDNTITQGEAYCVDTEKELLEKWAERDRDWE