Scaffold Ga0169171_101152

Overview

Basic Information

• Taxon OID: 3300029098
• Scaffold ID: Ga0169171_101152
• Source Dataset Name: Human fecal microbial communities from infant at 12 months in Denmark - 10_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14543
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089591	Metagenome	109	N
F093883	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169171_1011521	F089591	AGGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYEDGFLTDEVRMTYYRNPVRVDLAGYINSAGERSTDIDPELPDSLVEEILDMVAKQFNLNENELFRYRMDKDNVASFK
Ga0169171_1011529	F093883	N/A	MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKEMKANATGKTKAD