Scaffold Ga0169229_100065

Overview

Basic Information

• Taxon OID: 3300029095
• Scaffold ID: Ga0169229_100065
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 181_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84669
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (23.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F094005	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169229_10006579	F094005	N/A	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTPENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETFEKVITLDKKLKKLIEKLNE
Ga0169229_10006580	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS
Ga0169229_10006587	F044555	N/A	MKTKITINQNGNQILSCEVCKDIHNISFMSNEGILELISGLNYMGNLPTVPDLEKPIEIQITVLREIPLEQNKRVQTKIKEIIYNNLYDTLVEELKDTISRFKAQYNIQEINPYISDILQNPEDLYR
Ga0169229_10006593	F064817	N/A	MNIKNLFNRFRKQEPELSYSLNLIYLKDNKVVFNPNIQCAKDLENYLSDYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHANLEDILELMHHNWLKEFESFVFKRNYDTDMLFLNHSLTYILDQAEEEGRRICIQNIIERNINQENQDENETI