Basic Information | |
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IMG/M Taxon OID | 3300029095 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127429 | Gp0193538 | Ga0169229 |
Sample Name | Human fecal microbial communities from mother in Denmark - 181_M |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 155347311 |
Sequencing Scaffolds | 26 |
Novel Protein Genes | 31 |
Associated Families | 31 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 9 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 3 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1 |
All Organisms → Viruses → Predicted Viral | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | Denmark | |||||||
Coordinates | Lat. (o) | 55.676097 | Long. (o) | 12.568337 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F032312 | Metagenome / Metatranscriptome | 180 | N |
F044554 | Metagenome | 154 | N |
F044555 | Metagenome / Metatranscriptome | 154 | N |
F050794 | Metagenome | 145 | N |
F052660 | Metagenome | 142 | N |
F056682 | Metagenome | 137 | Y |
F057001 | Metagenome | 137 | Y |
F064725 | Metagenome | 128 | N |
F064817 | Metagenome | 128 | N |
F068811 | Metagenome | 124 | N |
F068855 | Metagenome | 124 | N |
F071325 | Metagenome | 122 | N |
F074899 | Metagenome / Metatranscriptome | 119 | N |
F074964 | Metagenome | 119 | N |
F075481 | Metagenome | 119 | N |
F076189 | Metagenome | 118 | N |
F076653 | Metagenome | 118 | N |
F077313 | Metagenome | 117 | N |
F078693 | Metagenome | 116 | N |
F083451 | Metagenome | 113 | N |
F087336 | Metagenome | 110 | N |
F088920 | Metagenome | 109 | Y |
F089590 | Metagenome | 109 | N |
F089591 | Metagenome | 109 | N |
F090484 | Metagenome | 108 | N |
F090513 | Metagenome | 108 | N |
F093883 | Metagenome | 106 | N |
F094005 | Metagenome / Metatranscriptome | 106 | N |
F098313 | Metagenome | 104 | N |
F099451 | Metagenome | 103 | N |
F106193 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0169229_100065 | Not Available | 84669 | Open in IMG/M |
Ga0169229_100581 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 26200 | Open in IMG/M |
Ga0169229_100775 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 21753 | Open in IMG/M |
Ga0169229_101652 | Not Available | 12873 | Open in IMG/M |
Ga0169229_101681 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 12741 | Open in IMG/M |
Ga0169229_101986 | Not Available | 11272 | Open in IMG/M |
Ga0169229_103154 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 7356 | Open in IMG/M |
Ga0169229_103240 | Not Available | 7186 | Open in IMG/M |
Ga0169229_103416 | Not Available | 6814 | Open in IMG/M |
Ga0169229_103583 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 6453 | Open in IMG/M |
Ga0169229_103896 | Not Available | 5958 | Open in IMG/M |
Ga0169229_103946 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 5866 | Open in IMG/M |
Ga0169229_104101 | Not Available | 5664 | Open in IMG/M |
Ga0169229_107394 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 3256 | Open in IMG/M |
Ga0169229_108380 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 2921 | Open in IMG/M |
Ga0169229_109875 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2525 | Open in IMG/M |
Ga0169229_113059 | All Organisms → Viruses → Predicted Viral | 1984 | Open in IMG/M |
Ga0169229_114189 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1852 | Open in IMG/M |
Ga0169229_116404 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1640 | Open in IMG/M |
Ga0169229_116894 | Not Available | 1602 | Open in IMG/M |
Ga0169229_116917 | Not Available | 1600 | Open in IMG/M |
Ga0169229_119663 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1412 | Open in IMG/M |
Ga0169229_119775 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1405 | Open in IMG/M |
Ga0169229_121649 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1305 | Open in IMG/M |
Ga0169229_122684 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1254 | Open in IMG/M |
Ga0169229_136672 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 819 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0169229_100065 | Ga0169229_10006579 | F094005 | MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTPENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETFEKVITLDKKLKKLIEKLNE |
Ga0169229_100065 | Ga0169229_10006580 | F032312 | MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS |
Ga0169229_100065 | Ga0169229_10006587 | F044555 | MKTKITINQNGNQILSCEVCKDIHNISFMSNEGILELISGLNYMGNLPTVPDLEKPIEIQITVLREIPLEQNKRVQTKIKEIIYNNLYDTLVEELKDTISRFKAQYNIQEINPYISDILQNPEDLYR |
Ga0169229_100065 | Ga0169229_10006593 | F064817 | MNIKNLFNRFRKQEPELSYSLNLIYLKDNKVVFNPNIQCAKDLENYLSDYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHANLEDILELMHHNWLKEFESFVFKRNYDTDMLFLNHSLTYILDQAEEEGRRICIQNIIERNINQENQDENETI |
Ga0169229_100581 | Ga0169229_10058115 | F074899 | MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSI |
Ga0169229_100775 | Ga0169229_10077519 | F068855 | VEVQVPQARKTLALQGLQAEKENENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSDGGAVW |
Ga0169229_101652 | Ga0169229_1016522 | F098313 | MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE |
Ga0169229_101681 | Ga0169229_1016816 | F087336 | VAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLVEQRQVAFLEIAFQILPLKSKQKRAP |
Ga0169229_101986 | Ga0169229_1019868 | F090484 | MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEFVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL |
Ga0169229_102670 | Ga0169229_1026701 | F089591 | MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK |
Ga0169229_103154 | Ga0169229_1031549 | F074964 | MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKMLEIPTEYAVKVATLAKDKKRLVAVCSQMLPKVDDIFVKFTLYSKVYKDTNADKEKGVEAKTADWCAENVVYGGEYKAFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESTQQ |
Ga0169229_103240 | Ga0169229_10324015 | F099451 | MEIKNVGQLRKIIENLSDDYEIEMRVRRKLSDEELKECRYPYPYDTEYLTLEFDDIGVSDKVLCFGVTSKIN |
Ga0169229_103416 | Ga0169229_1034163 | F077313 | MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNARTWTDTYDKNIAQRQGYQSRILQALANTDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKSKKG |
Ga0169229_103583 | Ga0169229_1035831 | F071325 | LSDSSIIISKVVLFVKHFFDIFLNLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL |
Ga0169229_103896 | Ga0169229_1038964 | F050794 | MQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG |
Ga0169229_103946 | Ga0169229_1039468 | F106193 | VGCNTCKEKALKAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP |
Ga0169229_104101 | Ga0169229_1041013 | F093883 | MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSFSLIKEDDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE |
Ga0169229_107394 | Ga0169229_1073942 | F044554 | VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFFFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL |
Ga0169229_108380 | Ga0169229_1083804 | F090513 | MEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY |
Ga0169229_109875 | Ga0169229_1098753 | F088920 | VSANLHHYPAFEAGLILHLILHFSQKAAIFAPKRAFSFLFVPTLFFVGLSVLSPQTSLKISGQASLY |
Ga0169229_113059 | Ga0169229_1130593 | F083451 | IMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM |
Ga0169229_114189 | Ga0169229_1141893 | F068811 | MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNGCRI |
Ga0169229_116404 | Ga0169229_1164041 | F057001 | MPIQVPRARANLMTGKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVALAKDKEVVIQLCKEILPRVDETFCAYKEIERVYLDKQDQDKNTKLPENKVADMAITGKAHKRFGYNEPIEYEGGVYYEVFNGSDKRIVKCAVPIKRYTYNLIAKCITYYLTHPKNGK |
Ga0169229_116894 | Ga0169229_1168942 | F064725 | MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI |
Ga0169229_116917 | Ga0169229_1169171 | F075481 | MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVIDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVMVDSLGIDKTITGIEDIDKKTDIEHKDVDDKKESRWPIAVTSISVLLILLGLIYLLKKMKVL |
Ga0169229_116917 | Ga0169229_1169172 | F089590 | VEXXXXXXYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS |
Ga0169229_119663 | Ga0169229_1196631 | F076653 | MTLSDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMISYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFM |
Ga0169229_119775 | Ga0169229_1197753 | F056682 | MKMQSRAGKVANHSIGQDKMYPASFGTFPLKNRSTFPIQKLGKIHENQEVL |
Ga0169229_121649 | Ga0169229_1216492 | F076189 | VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLYAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL |
Ga0169229_122684 | Ga0169229_1226841 | F078693 | VRGAERFFIKANCSLLLAKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS |
Ga0169229_136672 | Ga0169229_1366723 | F052660 | PEKIGQERAGTEWTVVKSKIRLCVRNRSYGRFFYGGILMGIALPIPSHRAKSHNFACWWPAAAGHSRSADALPGKSNS |
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