Scaffold Ga0169709_106113

Overview

Basic Information

• Taxon OID: 3300029024
• Scaffold ID: Ga0169709_106113
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 45_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2921
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064817	Metagenome	128	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169709_1061134	F105375	N/A	MKKIETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENRCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIESINRISSNIMQITFTV
Ga0169709_1061136	F064817	N/A	MNIKNLFNRFRKRESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI