Scaffold Ga0169709_100395

Overview

Basic Information

• Taxon OID: 3300029024
• Scaffold ID: Ga0169709_100395
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 45_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31748
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (28.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F101357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169709_10039528	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVVWFIVFLYGLVS
Ga0169709_10039529	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLEHSGTAMEMCNIFKNQDHEFWYRVIKPWFQPERFGITHLWFPSRLSFIFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYTPHRIKVLKLALKDLERIKEEYGKD
Ga0169709_10039532	F044555	N/A	MKTITRITINQNGNQILTCKVCKDINNILFMSNEEILELISGLDYIGNIPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0169709_10039538	F101357	N/A	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKGDFHNYANTSNTHYEGGKFPSMLTIQLFNLEF