Scaffold Ga0169709_100012

Overview

Basic Information

• Taxon OID: 3300029024
• Scaffold ID: Ga0169709_100012
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 45_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144902
• Total Scaffold Genes: 173
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (35.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169709_100012103	F098313	AGGAGG	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKNGKEE
Ga0169709_10001216	F074964	N/A	MITKKNVNKLQNSVIKENASNLVGAVKLYNALFANGSDLKAICKKLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCAENVVYGSEYKPFGFATAETLETKSSAKWIIKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNHQ
Ga0169709_10001265	F099406	N/A	MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKALESLGMVSTGVDSGYLDLSIFSGNSGSLDEGSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA