NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310375_1022294

Scaffold Ga0310375_1022294


Overview

Basic Information
Taxon OID3300028923 Open in IMG/M
Scaffold IDGa0310375_1022294 Open in IMG/M
Source Dataset NameLab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG0 msp
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Anaerobic Enrichment Culture → Metagenomes From Methanogenic Benzene-Degrading Culture

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)36.0Long. (o)-97.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073228Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0310375_10222941F073228N/ATIGDIMDVNNSKYGEFLYKIVMVYPHNLEVDQTELARLIKINNNTLTFERKTGEKFTLDERDIEHMDLFRSPNYKGGE

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