Scaffold Ga0265300_10000274

Overview

Basic Information

• Taxon OID: 3300028914
• Scaffold ID: Ga0265300_10000274
• Source Dataset Name: Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54765
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (27.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Australia: Woodstock, Queensland
• Coordinates
  • Lat. (^o): -19.6574
  • Long. (^o): 146.8351

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056169	Metagenome / Metatranscriptome	138	Y
F063247	Metagenome / Metatranscriptome	129	Y
F082008	Metagenome / Metatranscriptome	113	Y
F091120	Metagenome / Metatranscriptome	107	Y
F093056	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265300_1000027422	F063247	AGTAG	MEHTFPYKTTIEIDCDPFTGMGRQQDHYEHICKNIVGCEPQPRISAFFGCWTWPITYQTKEQQDKTAEFLKGLYNQGLCRYASW
Ga0265300_1000027425	F056169	GAG	MTPREAIEISRKYNLEAEIRQELASGLSPEQALEEWDIV
Ga0265300_1000027450	F082008	N/A	MGKSKGLLVVREKAALKRLEAAYENFKAAGEDKKPWTSTRNGRTIFHKGRTFNEECERMKKEIANLKANITKNS
Ga0265300_1000027484	F093056	N/A	MTYKRYEYWSSKGKVWTDWFLWNSDYKPELQMNDRRIINRLRNEYEERN
Ga0265300_1000027495	F091120	N/A	MHDLKTIVKGKADLDCVKSGGIAVYHITVEDGTIYSLDIDLSNKHDVGETATFMSHYDKALILMRWIRRALDNKELYKIS