NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10475930

Scaffold Ga0308309_10475930


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10475930 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1078
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000180Metagenome / Metatranscriptome1730Y
F014054Metagenome266Y
F069122Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_104759301F069122GAGGMEIEGSYIALGLKVWKTQIERADKLFGRLSSEEVLREIAPG
Ga0308309_104759302F000180AGAAGGMRAKRSHQNPTIDRAMTKEYIFSAGDYSDRDLYTSSRTRERALNSAIVRAEISESFEEYLEIFDAFYADDIEVSGETGKEPIRGKGRVRSLLANFLVPLHVMAEVGGLSISIRQTAMPGDVAGETHSAWTLDLVGVSGRTCTVTWQATRKWNGSRVVYEHHYDEQQNGGPLTLEDLSFNTANLP
Ga0308309_104759303F014054N/AEQAKISEWRGTLAKFASFDKDTLFVPGHGQLCGQEGIDSLGEIFDDIAAHAEKMFKSGVPVQEATNRYVVPDKFKNFFILAWGFTIGPTIAKLYAEWQAK
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