Scaffold Ga0247609_10429651

Overview

Basic Information

• Taxon OID: 3300028888
• Scaffold ID: Ga0247609_10429651
• Source Dataset Name: Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1398
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247609_104296512	F057035	N/A	MTEKEFLEKRIPIWLEGEDLHISRPTSAADRTDMHAFLSKKYGYNWLFAIRGYYWPGSHVMLYNGDYETPNCTTYVSQYLFNYFPDIKYIGFGCNKGKVGEIWSPKVTIIRDLSYFKDHDTGSI
Ga0247609_104296513	F064301	N/A	MAKKQAVVAPTKVQPVWQIAILFPDGRKISKPKCTLNDIFNTYFINLDKYLTKGLSAEELLEKYKETYSKGFKVQIAYIDSWGHRWTGKIAWPREDKFIEFLNKRLND
Ga0247609_104296514	F079361	N/A	VTYFTIAKNECGNLIDSISYDYNALKNKFPDEKIYYSEDPIINIYVSELKEYNG