NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247609_10024123

Scaffold Ga0247609_10024123


Overview

Basic Information
Taxon OID3300028888 Open in IMG/M
Scaffold IDGa0247609_10024123 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5541
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247609_1002412310F065312AGGAGGVSKKKNPKQKTWVEVFQSERKEFPQGYCVTRIIPDKRNKKPKHKGRELEE
Ga0247609_1002412317F012184AGGAGMTNVEILNTILSIPGAQMARRNKINFVVIPTDEGFVKVAVTNALAKDTKSHNAFNAEAAVAEYKAYEAEVALREAEKATKPVKMKGPNPEAQARRDELDAKITALPSFTEYTATDILNALAGQVGSNVTRMAVGQSAKRLV
Ga0247609_100241235F087968AGGAMVKITKTYARTLYNAGKEIMIIPNKMRVDSFMANWTSKPTNDPTADFDKLCNAISYYNCSPETGMGLAYYTKED
Ga0247609_100241238F086398GGAGGMKEQMTYHVAVQRADRVKHIIEEVGLGQIIKEKYTRFSLEQAGRWVCITDTGITIIKDESKEKIITMYVTTQRELVAVFGGQKNIPSYLRKKVDHNQDKYTKRGKTIWKS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.