Scaffold Ga0265299_10023521

Overview

Basic Information

• Taxon OID: 3300028887
• Scaffold ID: Ga0265299_10023521
• Source Dataset Name: Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5165
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Australia: Woodstock, Queensland
• Coordinates
  • Lat. (^o): -19.6574
  • Long. (^o): 146.8351

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046769	Metagenome / Metatranscriptome	150	Y
F102285	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265299_100235211	F102285	AGGAG	MKKIIAIKDFVAGGKSFIVGDEIKTKNYEAIVKLNEKGFIEPLGYKDLVLIKRELENTKE
Ga0265299_100235214	F046769	AGG	MICNGSLTVYHKSIDAYHNEVWTSHSYDNVWFFGSESASTNKGYDNANSVEVRIPYALNSGLNINDFNIGDILVQGTLTSNITTQQDLSGYVIYNITSIKNNNFGSQPHIHLGGI