Scaffold Ga0307304_10108636

Overview

Basic Information

• Taxon OID: 3300028885
• Scaffold ID: Ga0307304_10108636
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1117
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001079	Metagenome / Metatranscriptome	785	Y
F012223	Metagenome / Metatranscriptome	282	Y
F060750	Metagenome / Metatranscriptome	132	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307304_101086361	F066970	AGGCGG	VYLKHLSSLQFLTYVSFFAVVMAALFKFVPGRSPPV
Ga0307304_101086362	F060750	N/A	VGEDVRHSRPQIVRAWLILAFLAVLYLGWTLTVFFIEPGLR
Ga0307304_101086363	F001079	AGAAG	MAVETASSALPYVSWSSASMALITAVDWPLVFGSMQALKGHVQEYPGCQKLEAFVELAGEDYRIHCYTTWDTPEQLEAFLERGYTFERMLADVAGLQVEPPRVMEKVF
Ga0307304_101086365	F012223	N/A	FAGLAVVAFLAAWKAGHFHELDRMGGIPLLVHEEDYYTPEWALDEEEWADGDA