Scaffold Ga0307278_10005254

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10005254
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6212
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017176	Metagenome / Metatranscriptome	242	Y
F099060	Metagenome / Metatranscriptome	103	N
F100873	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1000525410	F017176	N/A	MNEKRKKKPKRFTDMLRPWIVARDTDGNVVIGREVFEGIRDGGRTKRCFVIEGLPPQGAVGNN
Ga0307278_100052544	F099060	N/A	MKAKLRVIYCAVAALGAVTVLSAQDVQTIWPVALAVALGTWLSASLIAHHYAQRPARQDKPSITAAAGAQTGEFPHGGDSRLTYAYDESTWQWLQRNHLPGLPGRDNVELEPTSILVPVDPFVEPKPGELRYEAQIERELDGSNPHSYVRLYRRGVFVGYDIRRTSRLETHPQEREYNPPVTQPLDGETTWQWIERNDLTGLPGRNNMELEPRRTLIATQPFAKPKVGEQLYDTEIELQIQGENKRGYYRFYRRGVFVGYDIPVAAYTTSA
Ga0307278_100052549	F100873	AGTAGG	MKYRIKSFILGVKEARRVSCTTVYGRPAGRAYDAGRKLSNGFTGLLKVRMT