Metagenome / Metatranscriptome Family F100873

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100873
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	49 residues
Representative Sequence	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMGLLKVGM
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.47 %
% of genes near scaffold ends (potentially truncated)	48.04 %
% of genes from short scaffolds (< 2000 bps)	72.55 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (39.216 % of family members)
Environment Ontology (ENVO)	Unclassified (52.941 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.686 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.26% β-sheet: 0.00% Coil/Unstructured: 39.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13414	TPR_11	2.94
PF00857	Isochorismatase	2.94
PF00011	HSP20	2.94
PF13287	Fn3_assoc	1.96
PF13561	adh_short_C2	1.96
PF07676	PD40	1.96
PF01139	RtcB	1.96
PF03144	GTP_EFTU_D2	0.98
PF13365	Trypsin_2	0.98
PF00884	Sulfatase	0.98
PF07690	MFS_1	0.98
PF05231	MASE1	0.98
PF13290	CHB_HEX_C_1	0.98
PF12838	Fer4_7	0.98
PF00069	Pkinase	0.98
PF13649	Methyltransf_25	0.98
PF13673	Acetyltransf_10	0.98
PF08410	DUF1737	0.98
PF14067	LssY_C	0.98
PF08544	GHMP_kinases_C	0.98
PF14437	MafB19-deam	0.98
PF16177	ACAS_N	0.98
PF00795	CN_hydrolase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.94
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	2.94
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.94
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	1.96
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.98
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.98
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	85.29 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	85.29 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	66.67 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	6.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	61.76 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	6.86 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	4.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	61.76 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	6.86 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	4.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	61.76 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	4.90 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	4.90 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	61.76 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4.90 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	4.90 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.98 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102HW6JZ	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
2170459009\|GA8DASG02HHU78	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100308507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	740	Open in IMG/M
3300000550\|F24TB_10658845	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	793	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1021933	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300000956\|JGI10216J12902_107518230	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1353	Open in IMG/M
3300002899\|JGIcombinedJ43975_10019090	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300002899\|JGIcombinedJ43975_10115492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300002914\|JGI25617J43924_10176748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300002915\|JGI25387J43893_1043818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	618	Open in IMG/M
3300004114\|Ga0062593_101122886	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300004156\|Ga0062589_100733181	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300005166\|Ga0066674_10005202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5066	Open in IMG/M
3300005166\|Ga0066674_10052894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1835	Open in IMG/M
3300005167\|Ga0066672_10053069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2333	Open in IMG/M
3300005175\|Ga0066673_10682673	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300005179\|Ga0066684_10943596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300005184\|Ga0066671_10116266	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1509	Open in IMG/M
3300005187\|Ga0066675_11212776	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300005293\|Ga0065715_10847980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	592	Open in IMG/M
3300005332\|Ga0066388_102634693	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	916	Open in IMG/M
3300005343\|Ga0070687_101051080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300005447\|Ga0066689_10032834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2661	Open in IMG/M
3300005447\|Ga0066689_10599968	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	694	Open in IMG/M
3300005467\|Ga0070706_100085180	All Organisms → cellular organisms → Bacteria	2928	Open in IMG/M
3300005540\|Ga0066697_10669710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300005545\|Ga0070695_100276434	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1232	Open in IMG/M
3300005553\|Ga0066695_10160421	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1402	Open in IMG/M
3300005553\|Ga0066695_10814909	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300005555\|Ga0066692_10043524	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2460	Open in IMG/M
3300005556\|Ga0066707_10134463	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300005566\|Ga0066693_10295659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300005576\|Ga0066708_10134624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1503	Open in IMG/M
3300005576\|Ga0066708_10939040	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300005586\|Ga0066691_10439303	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	778	Open in IMG/M
3300005598\|Ga0066706_10676520	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300005598\|Ga0066706_11220682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300005610\|Ga0070763_10928582	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300006032\|Ga0066696_10791545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	605	Open in IMG/M
3300006032\|Ga0066696_10857857	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300006791\|Ga0066653_10057599	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300006796\|Ga0066665_10866838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300006852\|Ga0075433_11074354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300007255\|Ga0099791_10272062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300009162\|Ga0075423_11907236	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300010320\|Ga0134109_10303514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	615	Open in IMG/M
3300010323\|Ga0134086_10008314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3147	Open in IMG/M
3300012199\|Ga0137383_10212142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1418	Open in IMG/M
3300012199\|Ga0137383_10222886	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300012201\|Ga0137365_10130956	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300012202\|Ga0137363_10432261	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300012205\|Ga0137362_10868083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300012209\|Ga0137379_10978794	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	751	Open in IMG/M
3300012211\|Ga0137377_11106628	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	722	Open in IMG/M
3300012285\|Ga0137370_10004077	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6495	Open in IMG/M
3300012354\|Ga0137366_10990639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300012356\|Ga0137371_11309227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300012360\|Ga0137375_11059869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300012929\|Ga0137404_10008202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	7148	Open in IMG/M
3300012929\|Ga0137404_10010508	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6397	Open in IMG/M
3300012929\|Ga0137404_10034892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3753	Open in IMG/M
3300012930\|Ga0137407_10010344	All Organisms → cellular organisms → Bacteria	6591	Open in IMG/M
3300012975\|Ga0134110_10076621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1334	Open in IMG/M
3300012976\|Ga0134076_10210182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	819	Open in IMG/M
3300012977\|Ga0134087_10433591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	647	Open in IMG/M
3300014157\|Ga0134078_10165294	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	880	Open in IMG/M
3300015359\|Ga0134085_10007981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3868	Open in IMG/M
3300017657\|Ga0134074_1076604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1140	Open in IMG/M
3300018468\|Ga0066662_11791205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300018482\|Ga0066669_12001283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300019867\|Ga0193704_1080522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	598	Open in IMG/M
3300019869\|Ga0193705_1001842	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4724	Open in IMG/M
3300019879\|Ga0193723_1009399	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3166	Open in IMG/M
3300019886\|Ga0193727_1004806	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5506	Open in IMG/M
3300019887\|Ga0193729_1036674	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2044	Open in IMG/M
3300020006\|Ga0193735_1029137	All Organisms → cellular organisms → Bacteria	1691	Open in IMG/M
3300020034\|Ga0193753_10357045	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300020170\|Ga0179594_10389309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	529	Open in IMG/M
3300026277\|Ga0209350_1004592	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4890	Open in IMG/M
3300026300\|Ga0209027_1187843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	672	Open in IMG/M
3300026306\|Ga0209468_1000448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	20058	Open in IMG/M
3300026324\|Ga0209470_1020378	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3596	Open in IMG/M
3300026327\|Ga0209266_1208773	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300026327\|Ga0209266_1278488	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300026329\|Ga0209375_1016110	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4424	Open in IMG/M
3300026330\|Ga0209473_1005661	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6554	Open in IMG/M
3300026332\|Ga0209803_1148314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	910	Open in IMG/M
3300026334\|Ga0209377_1305612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300026523\|Ga0209808_1116368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1105	Open in IMG/M
3300026528\|Ga0209378_1016426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4255	Open in IMG/M
3300026536\|Ga0209058_1014043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5522	Open in IMG/M
3300026538\|Ga0209056_10014922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7738	Open in IMG/M
3300026538\|Ga0209056_10101607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2343	Open in IMG/M
3300026547\|Ga0209156_10371039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	608	Open in IMG/M
3300026552\|Ga0209577_10705827	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300027682\|Ga0209971_1045627	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1057	Open in IMG/M
3300028828\|Ga0307312_10032907	All Organisms → cellular organisms → Bacteria	3031	Open in IMG/M
3300028878\|Ga0307278_10005254	All Organisms → cellular organisms → Bacteria	6212	Open in IMG/M
3300030945\|Ga0075373_11560654	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300031231\|Ga0170824_116514722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300031720\|Ga0307469_12280882	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300033412\|Ga0310810_10046349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5307	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.08%
Host-Associated	Host-Associated	3.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.08%
Plants	Host-Associated → Plants	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.24%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	47.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	39.22%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_04746800	2170459002	Grass Soil	AKRTEMKYKIKSFIVGVKEARGIFCTTAYGRPARKAYNMGRKLSNGFLGLLKLRMG
F47_05653990	2170459009	Grass Soil	MKYKIKSFILGVKEARRILCTGVHGRPARKAYNMGR
INPhiseqgaiiFebDRAFT_1003085071	3300000364	Soil	MKDKIKSFILGVREARRLVCTTIHGQPARRAYETGRKLSNGFMDLLKFRMGWD*
F24TB_106588452	3300000550	Soil	MKYKIKSFIVGVKEARRILCTTVYGQPARRAYDMGRKLS
KanNP_Total_noBrdU_T14TCDRAFT_10219333	3300000596	Soil	MKYKIQSFIVGVKEARGILCTTVYGRPARKAYDMGRKLSNGFLGL
JGI10216J12902_1075182302	3300000956	Soil	MKDKIKSFILGVREARRLVCTTVHGQPARRAYETGRKLSNGFMDLLKFRMG*
JGIcombinedJ43975_100190901	3300002899	Soil	RMKYKIKSFIVGVKEARRTLCTTVYGQPAGRAYDMGRKLSNGFMGLLNVGTG*
JGIcombinedJ43975_101154921	3300002899	Soil	MTYKIKSFIIGVQEGRRVVCTTVDGQPARKAYDIGRKLSNGFMDLLKAGMA*
JGI25617J43924_101767482	3300002914	Grasslands Soil	MKYKIKSFMLGVKEARRVLCTTVHGRPAGRAYDAGRRLSNGFTGLFKVRMT*
JGI25387J43893_10438181	3300002915	Grasslands Soil	KIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA*
Ga0062593_1011228862	3300004114	Soil	MKYKIKSFALGVKEARWILCTTVYGRPARMAYDIGRKLSNGFTGLLKVRMA*
Ga0062589_1007331811	3300004156	Soil	LRSAPHGAARHFDAKGDQRMKYKIKSFALGVKEARWILCNTVYGRPARMAYDIGRKLSNGFTGLLKVRMA*
Ga0066674_100052022	3300005166	Soil	MKYKIISFIVGVKEARRVLCTTVYGRPAKRAYDMGRKLSNGFMGLLLKSGMV*
Ga0066674_100528944	3300005166	Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA*
Ga0066672_100530694	3300005167	Soil	MKYKIRSFILGVKEARRILCTTVYGQPARTAYDMGRKLSNGFIGILKSEMV*
Ga0066673_106826731	3300005175	Soil	MKYTIKSFIVGVKEARRILCTTVHGQPARTAYDMGRKLSNGFMGLLKVGMA*
Ga0066684_109435962	3300005179	Soil	MKYTIKSFIVGVKEARRILCTTVQGRPARRAYDMGRKLSNGFVGLLKVGMG*
Ga0066671_101162662	3300005184	Soil	MKYTIKSFIVGVKEARRILCTTVHGRPARTAYDMGRKLSNGFMGLLKVGMA*
Ga0066675_112127762	3300005187	Soil	MKYTIKSFIVGVKEARRILCTTVQGRPARRAYDMGRKLSNGFVGLLKVGMA*
Ga0065715_108479801	3300005293	Miscanthus Rhizosphere	MKYKIKSFIVGVKEARWILCTTVYGQPARRAYDMGRKLSNGFTDLLKVVGMA*
Ga0066388_1026346933	3300005332	Tropical Forest Soil	MKYKNKSFIVGVKEARRATAVHRRPAGRAYDAGRKLSNGFTGLFKVRMT*
Ga0070687_1010510801	3300005343	Switchgrass Rhizosphere	MKYKIKSFIVGVKEARWILCTTVYGQPARRAYDMGRKLSNGF
Ga0066689_100328342	3300005447	Soil	MKYQIISFIVGVKEARRVLCTTVYGRPAKRAYDMGRKLSNGFMGLLLKSGMV*
Ga0066689_105999681	3300005447	Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFM
Ga0070706_1000851803	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKYKNKSFILGVKEARRATTVHGRPAGRAYDAGRKLSNGFTGLFKVRMT*
Ga0066697_106697102	3300005540	Soil	MKYKIKSFILGVKEARWILCTTIYGRSARRAYDMGRKLSNGFTGLLK
Ga0070695_1002764341	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GRMKYTIKSFILGAKEARSILCTTVYGRPARTAYEMGRKLSKGFTGHKL*
Ga0066695_101604212	3300005553	Soil	MKYNIKSFVLGLREARRVWCTTVYGRPARNAYNMGRKLSTGFMDLLKLRIG*
Ga0066695_108149091	3300005553	Soil	MKYKIKSFVLGLKEARRVWCTTVYGGPARNAYNMGRKLSNGFMDLLKLRIG*
Ga0066692_100435241	3300005555	Soil	MKYTIKSFILGAKEARSILCTTVYGRPARRAYDMGRKLSKGVMGLSKGEWHN
Ga0066707_101344633	3300005556	Soil	MEYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA*
Ga0066693_102956592	3300005566	Soil	MKYTIKSFILGAKEARSILPFMVGPPERAYDMGRKLSKGVMGLSNARMA*
Ga0066708_101346243	3300005576	Soil	MKYKIKSFIVGVKEARRTLCTTVYGQPARRAYDMGRKLSNRFMDLLKVVQMA*
Ga0066708_109390402	3300005576	Soil	MKYKIKSFIIGVKEGRRVVCTTVYGRPARKAYDMGRKLSN
Ga0066691_104393032	3300005586	Soil	MKYTIKSFILGAKEARSILCTTVYGRPARRAYDMGRKLSKGVMGLSKGEWHNKGCQTDY*
Ga0066706_106765203	3300005598	Soil	MKYKIKSFIVGVKEARRILCTTVYGQPATRAYDMGRRLSNGFTDLLKVVGMA*
Ga0066706_112206821	3300005598	Soil	QRMKYKIKSFVLGVKEARWMLCTTVYGGSARRAYDMGRKLSNGFTGLLKVRTA*
Ga0070763_109285822	3300005610	Soil	MTYKIKSFIIGVKEGRRVVCATGYGQPARKAYDIGRKLSNGFMDLLKAGMA*
Ga0066696_107915452	3300006032	Soil	MKYTIKSFIVGVKEARRILCTTVHGRPARTAYDMGRKLSNGFMGL
Ga0066696_108578571	3300006032	Soil	MKYTIKSFIVGVKEARRILCTTVHGRPARTAYDMGRKLSNGFMGLLKVG
Ga0066653_100575992	3300006791	Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNRFMDLLKAGMA*
Ga0066665_108668382	3300006796	Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARSAYDIGRKLSNGLMDLLKLRMG*
Ga0075433_110743541	3300006852	Populus Rhizosphere	IVGVKEARGILCTTIYGRPARKAYDMGRKLSNGFLGLLKLRMG*
Ga0099791_102720621	3300007255	Vadose Zone Soil	KIKSFMLGVKEARRVLCTTVRGRPAGRAYDAGRRLSNGFTGLFKVRMT*
Ga0075423_119072361	3300009162	Populus Rhizosphere	PAKRTEMKYKIKSFIVGVKEARGILCTTIYGRPARKAYDMGRKLSNGFLGLLKLRMG*
Ga0134109_103035142	3300010320	Grasslands Soil	MKYKIKSFIVGVKEARGILCTTAYGRPARKAYNMGRKLSNGFLGLLKLRMG*
Ga0134086_100083147	3300010323	Grasslands Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARNAYDMGRKLSTGLMDLLKLRMG*
Ga0137383_102121423	3300012199	Vadose Zone Soil	MKYKIKSFIIGVKEGRRVVCTTVYGRPARKAYDMGRKLYNGFMDLLKAGMA*
Ga0137383_102228861	3300012199	Vadose Zone Soil	MEYKIKSFIVGVKEVRRILCTTVYGQPARRAYDMGRKLSNNFMDLLK
Ga0137365_101309562	3300012201	Vadose Zone Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARNAYNMGRKLSTGFMDLLKLRMG*
Ga0137363_104322613	3300012202	Vadose Zone Soil	GVMKDKIKSLILGVKEARWLVCTTVHGQPARRAYEMGRKLSNGFMDLLKFRMG*
Ga0137362_108680832	3300012205	Vadose Zone Soil	MKYKIKSFIVGVKEARRILCTTVYGEPARRAHDMGRKLSNGFMGLLKVGMA*
Ga0137379_109787942	3300012209	Vadose Zone Soil	MKYKIKSFIVGVKEARRTLCTTVYGQPARRAYDMGKKLSNRFMDLLKVVQMA*
Ga0137377_111066281	3300012211	Vadose Zone Soil	MKYKIKSFIIGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA*
Ga0137370_100040773	3300012285	Vadose Zone Soil	MKYKLKSFIVGVKEARGILCTTAYGRPARKAYNMGRKLSNGFLGLLKLRMG*
Ga0137366_109906391	3300012354	Vadose Zone Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARNAYNMGRKLS
Ga0137371_113092271	3300012356	Vadose Zone Soil	AKGGRMKYKIKSFVLGLKEARRVWCTTVYGRPARSAYNMGRKLSTGFIDLLKLRIG*
Ga0137375_110598691	3300012360	Vadose Zone Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMG*
Ga0137404_100082026	3300012929	Vadose Zone Soil	MKYKIKSFIIGVREARGRWCTTVYGRPARRSYDMGRKLSNWFLALLTSGMA*
Ga0137404_100105084	3300012929	Vadose Zone Soil	MKYKIKSFVLGVKEARWILCTTVYGRSARMAYDMGRKLSNGFTGLLKVRMA*
Ga0137404_100348927	3300012929	Vadose Zone Soil	MKDKIKSFILGVKEARRLVCTTVHGQPARKAYEMGRKLSNGFMDLLKFRMG*
Ga0137407_100103441	3300012930	Vadose Zone Soil	MKYKIKSFIIGVREARGRWCTTVYGRPARRSYDMGRKLS
Ga0134110_100766212	3300012975	Grasslands Soil	MKYKIKSFVLGVKEARWISCTTVYGRPARIAYDMGRKLSNGFTALLKVRLA*
Ga0134076_102101821	3300012976	Grasslands Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARSAYDIGRKLSNGLMDLL
Ga0134087_104335911	3300012977	Grasslands Soil	MKYTIKSFIVGVKEARRMLCTTVHGRPARRAYDMGRKLSNGFMGLLKVGMA
Ga0134078_101652942	3300014157	Grasslands Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMGLLKVGM
Ga0134085_100079812	3300015359	Grasslands Soil	MKYKIKSFIVGVKEGRRVACTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA*
Ga0134074_10766041	3300017657	Grasslands Soil	MKYSIKSFILGVKEAHWILCTTVYGQPARRAYDMGRKLSNGFTGLLKVRMS
Ga0066662_117912051	3300018468	Grasslands Soil	MKYTIKSFILGAKEARSILCTTVYGRPARRAYDMGRKLSKGVMG
Ga0066669_120012831	3300018482	Grasslands Soil	MKYQIISFIVGVKEARRVLCTTVYGRPAKRAYDMGRKLSNGFMGLLLKSGMV
Ga0193704_10805221	3300019867	Soil	MKYKIKSFVVGVKEARRILCTTVYGQPARRAYDMGRELSNSFMG
Ga0193705_10018424	3300019869	Soil	MKYKIKSFVVGVKEARRILCTTVYGQPARRAYDMGRKLSNSFMGLLKVGMA
Ga0193723_10093994	3300019879	Soil	MKYKIKSFIVGVKEARWILCTTVYGQPARRAYDMERKISNGFMDLLKVVGMA
Ga0193727_10048066	3300019886	Soil	MKYKIKSFMVGVKEARRILCTTVYGRPARKAYDMGRKLSNGLMGLLKVGMA
Ga0193729_10366741	3300019887	Soil	MKYTIKSFILGAKEARSILCTTVYGRPARKAYEMGRKLSKGFT
Ga0193735_10291371	3300020006	Soil	AARHFDAKGDQRMKYKIKSFVLGVKEARWILCTTVSGRPARTAYDIGRKLSNGFAGLLKVRMA
Ga0193753_103570451	3300020034	Soil	MKYKIKSFILDVKEARRILCTAVHGRPARRAYNMG
Ga0179594_103893091	3300020170	Vadose Zone Soil	MKYKIKSFIVGVKEARRILCTTVYGEPARRAHDMGR
Ga0209350_10045929	3300026277	Grasslands Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA
Ga0209027_11878432	3300026300	Grasslands Soil	KIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA
Ga0209468_100044818	3300026306	Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNRFMDLLKAGMA
Ga0209470_10203784	3300026324	Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARNAYNMGRKLSTGFMDLLKLRMG
Ga0209266_12087731	3300026327	Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARNAYNMGRKLSTGFMDLLKL
Ga0209266_12784881	3300026327	Soil	MKYKIISFIVGVKEARRVLCTTVYGRPAKRAYDMGRKLSNG
Ga0209375_10161105	3300026329	Soil	MKYKIKSFVLGVKEARWISCTTVYGRPARIAYDMGRKLSNGFTALLKVRLA
Ga0209473_10056612	3300026330	Soil	MKYTIKSFIVGVKEARRILCTTVHGRPARTAYDMGRKLSNGFMGLLKVGMA
Ga0209803_11483144	3300026332	Soil	MKYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLL
Ga0209377_13056121	3300026334	Soil	MKYKIKSFMLGVKEARRVLCTTVHGRPAGRAYDAGRRLSNGFTGLFKVRM
Ga0209808_11163683	3300026523	Soil	RKEMKYKIKSFIVGVKEARGILCTTAYGRPARKAYNMGRKLSNGFLGLLKLRMG
Ga0209378_10164267	3300026528	Soil	MEYKIKSFIVGVKEGRRVVCTTVYGRPARKAYDMGRKLSNGFMDLLKAGMA
Ga0209058_10140439	3300026536	Soil	MKYKIISFIVGVKEARRVLCTTVYGRPAKRAYDMGRKLSNGFMGLLLKSGMV
Ga0209056_100149222	3300026538	Soil	MKYKIRSFILGVKEARRILCTTVYGQPARTAYDMGRKLSNGFIGILKSEMV
Ga0209056_101016071	3300026538	Soil	MKYKIKSFVLGLKEARRVWCTTVYGRPARNAYDMGRKLSTGLMDLLKLRMG
Ga0209156_103710391	3300026547	Soil	MKYTIKSFIVGVKEARRILCTTVHGRPARTAYDMGRKLSNGFMGLLK
Ga0209577_107058273	3300026552	Soil	MKYTIKSFIVGVKEARRILCTTVQGRPARRAYDMGRKLSNGFVGLLKVG
Ga0209971_10456273	3300027682	Arabidopsis Thaliana Rhizosphere	EMKYKIQSFIVGVKEARGILCTTVYGLPARKAYNMGRKLSNGFLGLLKLRMG
Ga0307312_100329072	3300028828	Soil	MKYKIKKEGRRVVCNTVYGQPARKAYDIGRKLSNGFMDLLKAGMA
Ga0307278_100052549	3300028878	Soil	MKYRIKSFILGVKEARRVSCTTVYGRPAGRAYDAGRKLSNGFTGLLKVRMT
Ga0075373_115606541	3300030945	Soil	MKYKIKSFIVGVKEARGILCTTVYGRPAGKAYNMRRKL
Ga0170824_1165147221	3300031231	Forest Soil	MKYKIKSFVLGVKEARRRLCTTVHGGSARRAYDMGRKLSNGFTGL
Ga0307469_122808821	3300031720	Hardwood Forest Soil	MKYSIKSFILGVKEAHWILCTTVYGRPARIAYDMGRKLSNGFTGLLKVR
Ga0310810_100463494	3300033412	Soil	MKYKIQSFIVGVKEARGILCTTVYGLPARKAYNMGRKLSNGFLGLLKLRMG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100873

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences