Scaffold Ga0307314_10000002

Overview

Basic Information

• Taxon OID: 3300028872
• Scaffold ID: Ga0307314_10000002
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108486
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (72.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F049823	Metagenome	146	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307314_10000002126	F049823	AGGGGG	MLGTIAPEAVQGSIEVVHGVVPPEKIDDALRLLHLDLLQRGAVAEELGQWLWGTHWFPHLNERPEILALAESLPREWRAGRMCDPQILLQFPHTGAEPEITFHLDQEPAWAEGRTYLRIVGVPLSSWRGDNGGLLVQTAEGPAPVEADPGDAIMMTPDLPHSGGVNRSGRLRYGVYFRWLTGG
Ga0307314_1000000216	F031439	AGG	MYVIPIVLIILLALIAVAWSPIFALVFFVIGFVAFLAYAGVSRRSDEKLAPPEQPGRQPQHEAQGETGMWGERKPS
Ga0307314_1000000246	F016854	GAG	MASSRLKTLPKPGEVWISCPPYLMMARIVAVDLNGESPVVSYELHDDDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0307314_1000000248	F081191	GGAGG	VAAIVALADDGFCRRSELALSFPRLESRDLRRALRRAVAQGLVIERRGPDGGFHVAVSSEGWNRHRNG