NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247610_10054586

Scaffold Ga0247610_10054586


Overview

Basic Information
Taxon OID3300028833 Open in IMG/M
Scaffold IDGa0247610_10054586 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3907
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y
F075545Metagenome / Metatranscriptome118Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0247610_1005458610F064301GGAGMAKTKGITSRTVSGPTKVPPVWQIGILFSDGKKISKPKCTLNEIFETYFIGLDKYISKNYTPEELLNKYKETFDAKGIKVQINYIDSWGHKWKGKVAWPRENKFIEYLNKRLNENHS
Ga0247610_1005458612F057035N/AMTEKEFLEKRTPIWLEGEDLHVSRPSTTDGNDMHAFLSKKYGYSWMFAIRGYYWPGSHLCLYIGDYECPNCTTLVAPYLFNYFPDIKWIGFGCNKGKPGEIWQPKILVLKDISCMDSDLFKVFEQ
Ga0247610_100545864F075545N/AMIQLVVNVELLREIDERKLINAYARFMYNDEKDTTDDVQIKENLIELFDWDRNGDDGLGVYCSHFEEIKRKDWEFLINFIKENHHEIKSISFYPAKEKKLESIKIVNDALETKKQHNIERFTDENYEVSGRGKKAKPCIYEGRKYKSQQECLYKEKLTKWQLYNYLKNTNQI
Ga0247610_100545868F079361N/AMIYFTIAKNDCGYLIDSISECYEVLRAKFPDEKIYKSDKPIVSIYILKEELNEIQN
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