Scaffold Ga0247610_10044477

Overview

Basic Information

• Taxon OID: 3300028833
• Scaffold ID: Ga0247610_10044477
• Source Dataset Name: Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4325
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanosphaera → unclassified Methanosphaera → Methanosphaera sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048027	Metagenome / Metatranscriptome	148	Y
F082826	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247610_1004447710	F082826	N/A	MHKYTIQMNYNASIIVEVTASDEGEALDKARDKAEDADIRQFTLGSENESKILRTE
Ga0247610_100444775	F048027	AGGAG	MSKNNESTKKSLGTRVRAIGESGRGVGMPNWFNLPQNKEKRALHIDICKKLTELSVANGNYPITYLVYFAVGKNAHRLPTFLGGYTKIDEKKAETIFKWLKLFSKYHKNAKLFRNPNVAHALCRFYDKFSTKTKDFKAAMESMEKNPKIDVKNAKAIVNGMGIAKKPKEEAEVEAAEAAMEMAVVTA