Scaffold Ga0265298_10100538

Overview

Basic Information

• Taxon OID: 3300028832
• Scaffold ID: Ga0265298_10100538
• Source Dataset Name: Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2893
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Australia: Woodstock, Queensland
• Coordinates
  • Lat. (^o): -19.6574
  • Long. (^o): 146.8351

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y
F075545	Metagenome / Metatranscriptome	118	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265298_101005381	F057035	N/A	MTEKEFLEKRTPIWLEGEDLHISTPSSSDKNDMHAFLSKKYGYNWLFAIRGYYWPGSHVMLYLGDYECPNCTLLVTSYIFGYFQDIKYIGFGCNKGKPGEIWPAKIIVARDMSCLSNDILSKQTEE
Ga0265298_101005382	F064301	N/A	MAKKKSTITKSMVVSPTKVQPVWQIGMLFPNGQKVSKPRCTLNEIFETYFLNLDKYIGKSITAEELLNKYKTTFESKGIKVQINYIDSWGHTWKGKVAWPRESKFIEYLNKRLNND
Ga0265298_101005384	F079361	N/A	MIYFTIAKNDCGYLIDSISNSYEVLKAKFPDEKIYKSDKPIVSIYVLKDQLDEVFG
Ga0265298_101005388	F075545	GGAG	MLLVINTNMLREFDERKLIHAYARYVYESEKDLSDDNNIKLNLIRLFDWDINGDNGLGIYCGKFESIKRKDWIKLIQFIKDNSYEIEKLSRPFLKEKKLENIKIVNDALEAKEQHNIERFSDENYTVSGRGKKARPCIYNGKEYKSRQECIYKEGITKYQLYEYLKETGQL