NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265298_10003495

Scaffold Ga0265298_10003495


Overview

Basic Information
Taxon OID3300028832 Open in IMG/M
Scaffold IDGa0265298_10003495 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20721
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046769Metagenome / Metatranscriptome150Y
F062887Metagenome / Metatranscriptome130Y
F102285Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0265298_1000349510F046769GGAMITNSSLTIYHKDGLDVSTHLEKWTRHNYSKVWFFGGKGAGINKGYDNANDVQVRIPYDQNSGLSIDNFAIGDIIVKGTLETDIETQDDLSSYQIYNITSINNNDFGNNKHIHLGGK
Ga0265298_1000349520F062887GAGGMPVRRTKSSGYKYSKSGKTYYGKGAKRKAIKQGQAIAISKRKRK
Ga0265298_100034957F102285GAGGMKIIAKVDFVANNEQYIKGDEIKELNYNQIVKLNELGFIEPLTFKDLTIIKRELENKGKEERL
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