Scaffold Ga0265298_10000217

Overview

Basic Information

• Taxon OID: 3300028832
• Scaffold ID: Ga0265298_10000217
• Source Dataset Name: Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89426
• Total Scaffold Genes: 207
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (26.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Australia: Woodstock, Queensland
• Coordinates
  • Lat. (^o): -19.6574
  • Long. (^o): 146.8351

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009724	Metagenome / Metatranscriptome	314	Y
F046128	Metagenome / Metatranscriptome	151	Y
F082008	Metagenome / Metatranscriptome	113	Y
F093056	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265298_10000217110	F093056	N/A	MMTYKRYEYWTNEGKKWTEWFEWDSDLRPELQLTDRRIISRLKNEYREL
Ga0265298_10000217182	F046128	N/A	MKKYLVRFTTKSGEYDKEWCHANSASEAENIIRQDHWNIESIDLVEEI
Ga0265298_10000217198	F009724	N/A	MENVFFTKFETIGLTKDEAIKNAAPLNLRVDATQAYKKWAKENVTNEDNVKEWMVDYLKKKKFNMPNDGAYIVLQSAVLDSRERPYKVEKPKYEARTHTPVRVYVGRAQDTNEEIFTEKTSKAAEQAAKEWVIENHVGVDLVIETRMKEKNSLYAKVNYVPSKGTQSCKLLVFGYKVMD
Ga0265298_1000021786	F082008	N/A	MGKGKGTLVVRERAALKRLEAAYEKFKAAGEDKKPWDSTRNGFPIHHKGRSYNEECERMKREISNLKENISKNSI